Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NW953_RS07490 Genome accession   NZ_CP102975
Coordinates   1573534..1575213 (-) Length   559 a.a.
NCBI ID   WP_258409145.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 16CS0209     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1568534..1580213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW953_RS07470 (NW953_07470) - 1568684..1569958 (-) 1275 WP_258409142.1 dihydrolipoamide acetyltransferase family protein -
  NW953_RS07475 (NW953_07475) - 1569971..1570954 (-) 984 WP_258409143.1 alpha-ketoacid dehydrogenase subunit beta -
  NW953_RS07480 (NW953_07480) - 1570954..1571946 (-) 993 WP_258409144.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  NW953_RS07485 (NW953_07485) lpdA 1571962..1573383 (-) 1422 WP_001291533.1 dihydrolipoyl dehydrogenase -
  NW953_RS07490 (NW953_07490) recN 1573534..1575213 (-) 1680 WP_258409145.1 DNA repair protein RecN Machinery gene
  NW953_RS07495 (NW953_07495) argR 1575229..1575681 (-) 453 WP_001124985.1 transcriptional regulator ArgR -
  NW953_RS07500 (NW953_07500) - 1576112..1576993 (-) 882 WP_258409146.1 polyprenyl synthetase family protein -
  NW953_RS07505 (NW953_07505) - 1576971..1577201 (-) 231 WP_000159865.1 exodeoxyribonuclease VII small subunit -
  NW953_RS07510 (NW953_07510) xseA 1577194..1578531 (-) 1338 WP_001286928.1 exodeoxyribonuclease VII large subunit -
  NW953_RS07515 (NW953_07515) nusB 1578548..1578937 (-) 390 WP_000087385.1 transcription antitermination factor NusB -
  NW953_RS07520 (NW953_07520) - 1578997..1579359 (-) 363 WP_258409147.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 64251.82 Da        Isoelectric Point: 4.7296

>NTDB_id=620691 NW953_RS07490 WP_258409145.1 1573534..1575213(-) (recN) [Staphylococcus aureus strain 16CS0209]
MLQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLIGMRASSDFVRHGEKKAVIEGIFDIDESKDAIHIL
KNMDIDVDEDFLLVKREIFSSGKSLCKINNQTVTLQDLRKVMQELLDIHGQHETQSLLKQKYHLTLLDNYAESRYQDLLD
KYHQTFQNYKAKKQELEDLESADQALLQRLDLMKFQLEELSEAHLKEGEIEQLEIDIKRIQNSEKLSLALNNAHMTLTDE
NAITDRLYELSNHLLTINDIVPNKYDKLKEDIDQFYYILEDAKHELYDEMANTEFDEQVLNDYESRMNLLNNLKRKYGKD
ISELIAYQEKLNNEINKIENYEQSTSQLREEINALYNQVIEVGQALSKQRRIVARELRDHIVSEIQNLQMKDANLEISFK
KLEEPNIDGIEFVEFLISPNKGEPLKSLNKIASGGELSRIMLALKSIFVKSRGQTAILFDEVDSGVSGQAAQKMAEKMRD
IAEYIQVICISHLPQVASMSDHHLLISKSSKDDRTTTQVQELIGDDKVDEIARMISGASVTDLTRENAREMIQHNQRRR

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=620691 NW953_RS07490 WP_258409145.1 1573534..1575213(-) (recN) [Staphylococcus aureus strain 16CS0209]
ATGTTACAAACCTTATCAATCAAGCAATTTGCTATTATTGAAGAGTTAGAAATTCAATTTTCTGATGGTTTAACTGTTTT
AAGTGGTGAAACGGGTTCAGGTAAGTCAATTATTATAGATGCAATTGGACAATTAATTGGAATGAGAGCTTCATCTGATT
TTGTAAGACATGGTGAAAAAAAGGCTGTCATCGAAGGTATATTTGATATTGACGAGAGTAAAGATGCTATACATATATTG
AAAAATATGGATATTGATGTAGATGAAGATTTTTTATTAGTTAAACGGGAAATTTTCAGCTCTGGTAAAAGTCTTTGTAA
AATTAATAATCAAACAGTTACTTTACAAGATTTACGAAAAGTTATGCAAGAATTATTAGATATTCATGGCCAACATGAAA
CGCAGTCTTTGTTGAAACAAAAATACCATTTAACATTATTGGATAATTACGCAGAATCACGTTATCAAGATTTGTTGGAT
AAATATCACCAAACTTTTCAAAATTATAAAGCCAAAAAGCAAGAGTTAGAAGATTTAGAATCAGCAGACCAAGCATTGCT
GCAGCGTTTAGATTTAATGAAATTTCAATTAGAAGAATTGTCTGAAGCACATCTAAAAGAAGGCGAAATAGAGCAACTTG
AAATAGATATTAAACGCATTCAAAACTCTGAAAAATTAAGCTTAGCTCTTAATAACGCACATATGACATTAACGGATGAA
AATGCTATCACTGATCGTTTGTATGAACTAAGCAACCATTTGTTAACAATAAACGATATAGTTCCAAACAAATATGACAA
ATTAAAAGAAGATATTGATCAATTTTATTACATTTTAGAAGATGCAAAACATGAGTTATATGATGAAATGGCTAATACAG
AATTCGACGAACAAGTGTTAAACGATTATGAATCTCGTATGAATTTGCTGAATAATTTAAAACGAAAATATGGAAAAGAT
ATTTCAGAATTAATCGCATATCAAGAAAAACTTAATAATGAAATCAATAAAATTGAAAACTATGAACAAAGTACATCGCA
GTTACGAGAAGAAATAAATGCATTGTATAATCAAGTTATAGAGGTTGGACAAGCGTTATCTAAGCAGCGTCGTATAGTTG
CTAGGGAGTTAAGAGATCACATTGTATCGGAAATTCAAAACTTACAAATGAAAGATGCAAATCTTGAGATTTCATTTAAA
AAATTAGAAGAACCGAATATTGATGGAATCGAATTTGTAGAATTTTTAATCAGTCCTAATAAAGGGGAACCATTAAAAAG
TTTAAATAAAATTGCGTCAGGTGGAGAACTTTCTAGAATTATGTTAGCGTTAAAAAGTATTTTTGTTAAATCGAGAGGTC
AAACTGCAATTTTATTTGATGAGGTTGACTCAGGTGTATCTGGACAAGCCGCACAAAAAATGGCAGAGAAAATGCGAGAT
ATAGCAGAATATATACAAGTTATTTGTATATCTCACTTGCCACAAGTTGCATCGATGAGCGACCATCATTTATTAATTTC
GAAATCATCAAAAGATGATCGTACAACAACACAAGTTCAAGAGTTAATTGGCGATGATAAAGTAGATGAAATTGCACGAA
TGATTTCAGGTGCAAGTGTTACTGATTTAACTCGTGAAAATGCAAGAGAAATGATACAACACAATCAAAGACGTAGATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.234

100

0.44