Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   N565_RS03420 Genome accession   NC_022351
Coordinates   635559..636332 (+) Length   257 a.a.
NCBI ID   WP_002858613.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni 00-2538     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 630559..641332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N565_RS03405 (N565_00665) - 631408..633342 (-) 1935 WP_002858479.1 ribonuclease R family protein -
  N565_RS03410 (N565_00666) ilvC 633461..634483 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  N565_RS03415 (N565_00667) - 634487..635569 (+) 1083 WP_002858589.1 divergent polysaccharide deacetylase family protein -
  N565_RS03420 (N565_00668) dprA 635559..636332 (+) 774 WP_002858613.1 DNA-processing protein DprA Machinery gene
  N565_RS03425 (N565_00669) ruvX 636329..636712 (+) 384 WP_002858579.1 Holliday junction resolvase RuvX -
  N565_RS03430 (N565_00670) - 636741..637580 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  N565_RS03435 (N565_00671) msrA 637756..638253 (-) 498 WP_002858555.1 peptide-methionine (S)-S-oxide reductase MsrA -
  N565_RS03440 (N565_00672) ppa 638294..638812 (-) 519 WP_002858521.1 inorganic diphosphatase -
  N565_RS03445 (N565_00673) adk 638822..639400 (-) 579 WP_002858481.1 adenylate kinase -
  N565_RS03450 (N565_00674) aspS 639397..641148 (-) 1752 WP_002858612.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28864.66 Da        Isoelectric Point: 7.0853

>NTDB_id=62068 N565_RS03420 WP_002858613.1 635559..636332(+) (dprA) [Campylobacter jejuni subsp. jejuni 00-2538]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKSKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=62068 N565_RS03420 WP_002858613.1 635559..636332(+) (dprA) [Campylobacter jejuni subsp. jejuni 00-2538]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGCAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAATCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.054

100

0.981
  dprA Helicobacter pylori 26695

48.75

93.385

0.455

Multiple sequence alignment