Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NW953_RS03615 Genome accession   NZ_CP102975
Coordinates   760082..761164 (+) Length   360 a.a.
NCBI ID   WP_000370984.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 16CS0209     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 755082..766164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW953_RS03595 (NW953_03595) - 755452..756522 (-) 1071 WP_000460983.1 GGDEF domain-containing protein -
  NW953_RS03600 (NW953_03600) - 756840..757895 (+) 1056 WP_258409772.1 MraY family glycosyltransferase -
  NW953_RS03605 (NW953_03605) - 758067..758708 (-) 642 WP_258409773.1 YigZ family protein -
  NW953_RS03610 (NW953_03610) fakB1 758852..759718 (+) 867 WP_000686342.1 fatty acid kinase binding subunit FakB1 -
  NW953_RS03615 (NW953_03615) comFA 760082..761164 (+) 1083 WP_000370984.1 DEAD/DEAH box helicase Machinery gene
  NW953_RS03620 (NW953_03620) - 761157..761831 (+) 675 WP_001057973.1 ComF family protein -
  NW953_RS03625 (NW953_03625) raiA 761892..762464 (+) 573 WP_258409774.1 ribosome-associated translation inhibitor RaiA -
  NW953_RS03630 (NW953_03630) secA 762878..765409 (+) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  NW953_RS03635 (NW953_03635) - 765451..765548 (+) 98 Protein_702 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42016.52 Da        Isoelectric Point: 9.6568

>NTDB_id=620658 NW953_RS03615 WP_000370984.1 760082..761164(+) (comFA) [Staphylococcus aureus strain 16CS0209]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPLENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSIYKQKITKLTYVHSEDVFRFEKVEQLRNGQYDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=620658 NW953_RS03615 WP_000370984.1 760082..761164(+) (comFA) [Staphylococcus aureus strain 16CS0209]
ATGGATAATGTAACAAGATATAAAATAACAGAAAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
ATCGGAACAACAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGACGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCTCGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAACAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGATTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACAATACGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TAGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGTGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(215-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

39.233

94.167

0.369