Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LJF64_RS17330 Genome accession   NZ_CP085820
Coordinates   3648119..3648724 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Typhimurium strain Wartortle     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3643119..3653724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJF64_RS17310 (LJF64_17310) - 3643514..3645274 (-) 1761 WP_000156453.1 AAA family ATPase -
  LJF64_RS17315 (LJF64_17315) matP 3645460..3645912 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  LJF64_RS17320 (LJF64_17320) ompA 3645984..3647036 (-) 1053 WP_001674965.1 porin OmpA -
  LJF64_RS17325 (LJF64_17325) sulA 3647393..3647902 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  LJF64_RS17330 (LJF64_17330) sxy/tfoX 3648119..3648724 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  LJF64_RS17335 (LJF64_17335) yccS 3648711..3650864 (-) 2154 WP_000950880.1 YccS family putative transporter -
  LJF64_RS17340 (LJF64_17340) - 3650883..3651329 (-) 447 WP_001261222.1 YccF domain-containing protein -
  LJF64_RS17345 (LJF64_17345) helD 3651453..3653507 (+) 2055 WP_000420505.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=620616 LJF64_RS17330 WP_001202375.1 3648119..3648724(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Typhimurium strain Wartortle]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=620616 LJF64_RS17330 WP_001202375.1 3648119..3648724(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Typhimurium strain Wartortle]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAGGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751