Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NW945_RS06940 Genome accession   NZ_CP102974
Coordinates   1469416..1470042 (+) Length   208 a.a.
NCBI ID   WP_258414169.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 01-RR-86     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1464416..1475042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW945_RS06905 (NW945_06905) - 1465400..1465732 (-) 333 WP_000516795.1 DUF4889 domain-containing protein -
  NW945_RS06910 (NW945_06910) - 1465816..1466961 (-) 1146 WP_000487150.1 class I SAM-dependent RNA methyltransferase -
  NW945_RS06920 (NW945_06920) gpsB 1467612..1467956 (-) 345 WP_001286320.1 cell division regulator GpsB -
  NW945_RS06925 (NW945_06925) - 1467970..1468533 (-) 564 WP_000241308.1 DUF1273 domain-containing protein -
  NW945_RS06930 (NW945_06930) - 1468526..1468876 (-) 351 WP_001000805.1 YppE family protein -
  NW945_RS06935 (NW945_06935) - 1468931..1469110 (-) 180 WP_001788819.1 hypothetical protein -
  NW945_RS06940 (NW945_06940) recU 1469416..1470042 (+) 627 WP_258414169.1 Holliday junction resolvase RecU Machinery gene
  NW945_RS06945 (NW945_06945) - 1470039..1472222 (+) 2184 WP_000138343.1 transglycosylase domain-containing protein -
  NW945_RS06950 (NW945_06950) - 1472788..1473129 (-) 342 WP_258414170.1 YpoC family protein -
  NW945_RS06955 (NW945_06955) nth 1473134..1473793 (-) 660 WP_000253768.1 endonuclease III -
  NW945_RS06960 (NW945_06960) - 1473783..1474469 (-) 687 WP_000362213.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24457.84 Da        Isoelectric Point: 9.7084

>NTDB_id=620600 NW945_RS06940 WP_258414169.1 1469416..1470042(+) (recU) [Staphylococcus aureus strain 01-RR-86]
MNYPNGKPYRKNSAIDGGKKTAAFSNIEYGGRGMSLEKDIEHSNTFYLKSDIAVIHKKPTPVQIVNVNYPKRSKAVINEA
YFRTPSTTDYNGVYQGYYIDFEAKETKNKTSFPLNNIHDHQVEHMKNAYQQKGIVFLMIRFKTLDEVYLLPYSKFEIFWK
RYKDNIKKSITVDEIRKNGYHIPYQYQPRLDYLKAVDKLILDESEDRV

Nucleotide


Download         Length: 627 bp        

>NTDB_id=620600 NW945_RS06940 WP_258414169.1 1469416..1470042(+) (recU) [Staphylococcus aureus strain 01-RR-86]
ATGAATTATCCAAATGGTAAACCATATCGTAAAAATAGTGCTATAGACGGAGGGAAAAAGACCGCTGCCTTTAGTAATAT
TGAGTATGGTGGACGTGGTATGTCACTTGAAAAAGATATCGAACATTCAAATACGTTTTATCTTAAAAGCGACATTGCAG
TTATTCACAAAAAGCCTACGCCAGTACAAATAGTTAATGTCAACTATCCTAAGCGGAGTAAAGCTGTGATTAACGAAGCT
TATTTTCGTACACCTTCAACAACTGATTACAACGGCGTTTATCAAGGTTATTATATTGATTTTGAAGCAAAGGAAACTAA
AAACAAGACGTCCTTTCCTTTAAATAATATTCATGACCATCAAGTCGAACATATGAAAAATGCATATCAACAAAAAGGTA
TTGTGTTTTTAATGATTCGTTTTAAAACGCTAGATGAAGTTTATCTTTTACCCTATTCAAAATTCGAAATATTTTGGAAG
AGATATAAAGATAATATTAAAAAGTCTATAACAGTTGATGAAATACGAAAAAATGGTTACCATATTCCTTATCAGTATCA
ACCAAGATTAGACTATCTAAAAGCAGTTGATAAGTTGATATTAGATGAAAGTGAGGACCGCGTATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(32-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

53.14

99.519

0.529