Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LJF65_RS23440 Genome accession   NZ_CP085819
Coordinates   4823008..4823613 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Typhimurium strain Blastoise     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4818008..4828613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJF65_RS23425 (LJF65_23430) helD 4818225..4820279 (-) 2055 WP_000420505.1 DNA helicase IV -
  LJF65_RS23430 (LJF65_23435) - 4820403..4820849 (+) 447 WP_001261222.1 YccF domain-containing protein -
  LJF65_RS23435 (LJF65_23440) yccS 4820868..4823021 (+) 2154 WP_000950880.1 YccS family putative transporter -
  LJF65_RS23440 (LJF65_23445) sxy/tfoX 4823008..4823613 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  LJF65_RS23445 (LJF65_23450) sulA 4823830..4824339 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  LJF65_RS23450 (LJF65_23455) ompA 4824696..4825748 (+) 1053 WP_001674965.1 porin OmpA -
  LJF65_RS23455 (LJF65_23460) matP 4825820..4826272 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  LJF65_RS23460 (LJF65_23465) - 4826458..4828218 (+) 1761 WP_000156453.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=620598 LJF65_RS23440 WP_001202375.1 4823008..4823613(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Typhimurium strain Blastoise]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=620598 LJF65_RS23440 WP_001202375.1 4823008..4823613(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Typhimurium strain Blastoise]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAGGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751