Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NW963_RS03665 Genome accession   NZ_CP102972
Coordinates   766323..767405 (+) Length   360 a.a.
NCBI ID   WP_001548033.1    Uniprot ID   A0A0H2XJ41
Organism   Staphylococcus aureus strain 05-RR-90     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 761323..772405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW963_RS03645 (NW963_03645) - 761693..762763 (-) 1071 WP_000460983.1 GGDEF domain-containing protein -
  NW963_RS03650 (NW963_03650) - 763081..764136 (+) 1056 WP_000258150.1 MraY family glycosyltransferase -
  NW963_RS03655 (NW963_03655) - 764308..764949 (-) 642 WP_000192957.1 YigZ family protein -
  NW963_RS03660 (NW963_03660) fakB1 765093..765959 (+) 867 WP_258412460.1 fatty acid kinase binding subunit FakB1 -
  NW963_RS03665 (NW963_03665) comFA 766323..767405 (+) 1083 WP_001548033.1 DEAD/DEAH box helicase Machinery gene
  NW963_RS03670 (NW963_03670) - 767398..768072 (+) 675 WP_001057965.1 ComF family protein -
  NW963_RS03675 (NW963_03675) raiA 768133..768705 (+) 573 WP_000617735.1 ribosome-associated translation inhibitor RaiA -
  NW963_RS03680 (NW963_03680) secA 769119..771650 (+) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  NW963_RS03685 (NW963_03685) - 771692..771796 (+) 105 WP_001790092.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42111.65 Da        Isoelectric Point: 9.8307

>NTDB_id=620480 NW963_RS03665 WP_001548033.1 766323..767405(+) (comFA) [Staphylococcus aureus strain 05-RR-90]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRKRQTILLYAVTGAGKTEMMFQGIQYARIQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSRQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKNLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNKKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=620480 NW963_RS03665 WP_001548033.1 766323..767405(+) (comFA) [Staphylococcus aureus strain 05-RR-90]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAATACAGGGAGATAATATAGCTATTGTGTCA
CCGCGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGACAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAATCTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACAATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGTTATTTCAAACTTAATAATAAGAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTCCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAG
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2XJ41

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367