Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   N646_RS11625 Genome accession   NC_022349
Coordinates   2527129..2527854 (-) Length   241 a.a.
NCBI ID   WP_025998648.1    Uniprot ID   A0AAW9AHG9
Organism   Vibrio alginolyticus NBRC 15630 = ATCC 17749     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2522129..2532854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N646_RS11600 (N646_2331) - 2523271..2523762 (+) 492 WP_005379305.1 type II secretion system protein M -
  N646_RS11605 (N646_2332) - 2523764..2524525 (+) 762 WP_017820696.1 type II secretion system protein N -
  N646_RS11610 (N646_2333) cysQ 2524829..2525656 (-) 828 WP_005379308.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  N646_RS11615 (N646_2334) nudE 2525701..2526270 (-) 570 WP_005379309.1 ADP compounds hydrolase NudE -
  N646_RS11620 (N646_2335) nfuA 2526447..2527031 (-) 585 WP_005379313.1 Fe-S biogenesis protein NfuA -
  N646_RS11625 (N646_2337) comF 2527129..2527854 (-) 726 WP_025998648.1 amidophosphoribosyltransferase Machinery gene
  N646_RS11630 (N646_2338) bioH 2527939..2528706 (+) 768 WP_021707605.1 pimeloyl-ACP methyl ester esterase BioH -
  N646_RS11635 (N646_2339) - 2528831..2529295 (+) 465 WP_005379316.1 hypothetical protein -
  N646_RS11640 (N646_2340) - 2529400..2531721 (-) 2322 WP_017820698.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27767.95 Da        Isoelectric Point: 9.2064

>NTDB_id=62048 N646_RS11625 WP_025998648.1 2527129..2527854(-) (comF) [Vibrio alginolyticus NBRC 15630 = ATCC 17749]
MLSHHWQNIMHRVLSSQCGLCRFPIQTPSHTNTLRWCEHCLKYLTPVKRCQRCGLSLQKEEMSTDSICGECLSEPPPWQR
LYTLGDYDFPLSREVQRFKDHGESWHVKALTEQLAQRITTPAPIITSVPLHWQRYLRRGFNQSDVLARHLAKQLQTNFDA
KVFRRVKLAQSQRGNTKTSREQNLKGAFILNKQPHSSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPRS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=62048 N646_RS11625 WP_025998648.1 2527129..2527854(-) (comF) [Vibrio alginolyticus NBRC 15630 = ATCC 17749]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTATTGAGCAGTCAATGCGGCCTGTGTCGGTTCCCTATTCAAAC
ACCAAGCCACACAAATACTCTGCGCTGGTGCGAGCACTGTTTAAAATACCTAACTCCGGTAAAACGATGTCAACGCTGCG
GTTTATCATTACAGAAAGAAGAAATGAGTACGGATAGTATTTGTGGTGAATGTCTTTCAGAGCCACCGCCATGGCAAAGG
CTATACACGTTAGGCGATTACGACTTTCCCCTTTCACGGGAAGTACAACGCTTTAAAGATCACGGAGAGTCTTGGCATGT
AAAAGCATTAACCGAGCAACTGGCACAGCGCATCACCACGCCAGCTCCAATCATTACCAGTGTGCCATTGCACTGGCAGC
GTTACCTGCGCCGGGGTTTTAATCAAAGTGATGTTTTAGCCCGACACCTCGCCAAGCAATTGCAGACTAATTTTGATGCG
AAGGTCTTTCGTCGAGTAAAGCTCGCCCAATCACAGCGTGGTAATACCAAAACAAGCCGTGAACAAAACTTAAAAGGCGC
GTTTATTCTCAATAAGCAACCTCACTCTTCCCATGTTGCCATCGTCGATGATGTAGTCACCACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTCGTTCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

71.784

100

0.718
  comF Vibrio cholerae strain A1552

47.5

99.585

0.473

Multiple sequence alignment