Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LJF38_RS10710 Genome accession   NZ_CP085814
Coordinates   2272057..2272662 (+) Length   201 a.a.
NCBI ID   WP_227798760.1    Uniprot ID   -
Organism   Salmonella enterica subsp. enterica serovar Enteritidis strain Plusle     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2267057..2277662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJF38_RS10690 (LJF38_10690) - 2267452..2269212 (-) 1761 WP_000156448.1 AAA family ATPase -
  LJF38_RS10695 (LJF38_10695) matP 2269398..2269850 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  LJF38_RS10700 (LJF38_10700) ompA 2269922..2270974 (-) 1053 WP_001674965.1 porin OmpA -
  LJF38_RS10705 (LJF38_10705) sulA 2271331..2271840 (-) 510 WP_000288733.1 SOS-induced cell division inhibitor SulA -
  LJF38_RS10710 (LJF38_10710) sxy/tfoX 2272057..2272662 (+) 606 WP_227798760.1 TfoX/Sxy family DNA transformation protein Regulator
  LJF38_RS10715 (LJF38_10715) yccS 2272649..2274802 (-) 2154 WP_000950876.1 YccS family putative transporter -
  LJF38_RS10720 (LJF38_10720) - 2274821..2275267 (-) 447 WP_001261222.1 YccF domain-containing protein -
  LJF38_RS10725 (LJF38_10725) helD 2275391..2277445 (+) 2055 WP_000420505.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23203.00 Da        Isoelectric Point: 9.0102

>NTDB_id=620479 LJF38_RS10710 WP_227798760.1 2272057..2272662(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Enteritidis strain Plusle]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRRELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=620479 LJF38_RS10710 WP_227798760.1 2272057..2272662(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Enteritidis strain Plusle]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCCCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTTCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCGGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.377

99.005

0.746