Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   NW975_RS09815 Genome accession   NZ_CP102971
Coordinates   2009319..2010035 (+) Length   238 a.a.
NCBI ID   WP_000688498.1    Uniprot ID   Q2VG52
Organism   Staphylococcus aureus strain 08-G-E     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2004319..2015035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW975_RS09785 (NW975_09785) - 2004539..2005165 (+) 627 WP_000522384.1 nitroreductase family protein -
  NW975_RS09790 (NW975_09790) - 2005526..2006311 (+) 786 WP_000867949.1 carbon-nitrogen family hydrolase -
  NW975_RS09795 (NW975_09795) - 2006908..2007042 (-) 135 WP_001549197.1 delta-lysin family phenol-soluble modulin -
  NW975_RS09800 (NW975_09800) - 2007278..2007841 (+) 564 WP_001105715.1 accessory gene regulator AgrB -
  NW975_RS09805 (NW975_09805) agrD 2007843..2007983 (+) 141 WP_001094303.1 cyclic lactone autoinducer peptide AgrD -
  NW975_RS09810 (NW975_09810) agrC 2008008..2009300 (+) 1293 WP_258411232.1 quorum-sensing sensor histidine kinase AgrC -
  NW975_RS09815 (NW975_09815) agrA 2009319..2010035 (+) 717 WP_000688498.1 quorum-sensing response regulator AgrA Regulator
  NW975_RS09820 (NW975_09820) - 2010115..2010224 (+) 110 Protein_1894 hypothetical protein -
  NW975_RS09825 (NW975_09825) - 2010412..2011371 (-) 960 WP_001253302.1 carbohydrate kinase -
  NW975_RS09830 (NW975_09830) - 2011368..2012852 (-) 1485 WP_258411747.1 sucrose-6-phosphate hydrolase -
  NW975_RS09835 (NW975_09835) - 2013001..2013951 (-) 951 WP_000790325.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27933.91 Da        Isoelectric Point: 6.0927

>NTDB_id=620453 NW975_RS09815 WP_000688498.1 2009319..2010035(+) (agrA) [Staphylococcus aureus strain 08-G-E]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSRDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=620453 NW975_RS09815 WP_000688498.1 2009319..2010035(+) (agrA) [Staphylococcus aureus strain 08-G-E]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTAT
TATCAAGAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTTAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterProScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2VG52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

99.58

100

0.996