Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LJF40_RS16940 Genome accession   NZ_CP085812
Coordinates   3513066..3513671 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Schwarzengrund strain Articuno     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3508066..3518671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJF40_RS16920 (LJF40_16920) - 3508461..3510221 (-) 1761 WP_000156445.1 AAA family ATPase -
  LJF40_RS16925 (LJF40_16925) matP 3510407..3510859 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  LJF40_RS16930 (LJF40_16930) ompA 3510931..3511983 (-) 1053 WP_001562588.1 porin OmpA -
  LJF40_RS16935 (LJF40_16935) sulA 3512340..3512849 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  LJF40_RS16940 (LJF40_16940) sxy/tfoX 3513066..3513671 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  LJF40_RS16945 (LJF40_16945) yccS 3513658..3515811 (-) 2154 WP_000950870.1 YccS family putative transporter -
  LJF40_RS16950 (LJF40_16950) - 3515830..3516273 (-) 444 WP_001261221.1 YccF domain-containing protein -
  LJF40_RS16955 (LJF40_16955) helD 3516397..3518451 (+) 2055 WP_000420528.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=620442 LJF40_RS16940 WP_001202375.1 3513066..3513671(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Schwarzengrund strain Articuno]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=620442 LJF40_RS16940 WP_001202375.1 3513066..3513671(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Schwarzengrund strain Articuno]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACAGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751