Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   N646_RS10660 Genome accession   NC_022349
Coordinates   2317443..2318552 (-) Length   369 a.a.
NCBI ID   WP_017821579.1    Uniprot ID   -
Organism   Vibrio alginolyticus NBRC 15630 = ATCC 17749     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2312443..2323552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N646_RS10630 (N646_2132) hemF 2312903..2313820 (-) 918 WP_017821583.1 oxygen-dependent coproporphyrinogen oxidase -
  N646_RS10635 (N646_2133) - 2313868..2314425 (-) 558 WP_005379084.1 L-threonylcarbamoyladenylate synthase -
  N646_RS10640 (N646_2134) purE 2314625..2315110 (+) 486 WP_017821582.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  N646_RS10645 (N646_2135) - 2315115..2316248 (+) 1134 WP_017821581.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  N646_RS10650 (N646_2136) - 2316315..2316884 (-) 570 WP_017821580.1 type I DNA topoisomerase -
  N646_RS10655 (N646_2137) - 2316961..2317440 (-) 480 WP_005379074.1 DUF494 family protein -
  N646_RS10660 (N646_2138) dprA 2317443..2318552 (-) 1110 WP_017821579.1 DNA-processing protein DprA Machinery gene
  N646_RS10665 (N646_2139) - 2318536..2319630 (-) 1095 WP_017821578.1 LysM peptidoglycan-binding domain-containing protein -
  N646_RS10670 (N646_2140) def 2319769..2320287 (+) 519 WP_005379068.1 peptide deformylase -
  N646_RS10675 (N646_2141) fmt 2320321..2321268 (+) 948 WP_017821577.1 methionyl-tRNA formyltransferase -
  N646_RS10680 (N646_2142) rsmB 2321349..2322632 (+) 1284 WP_017821576.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 40017.76 Da        Isoelectric Point: 7.2248

>NTDB_id=62044 N646_RS10660 WP_017821579.1 2317443..2318552(-) (dprA) [Vibrio alginolyticus NBRC 15630 = ATCC 17749]
MNRRNNDDLAAWLKLSCLPGIGGVKMNKLLARDTPRNIVNFSPEQLQQLGLTTKQIQAWASTDKEVDACLSWLEASTNHH
ILTLTDPRYPPQLKQIVAPPPLLFVQGNPTCLSQPQIAMVGSRNASIDGLQHARQFAAEFVQHDFIVTSGLALGIDGHAH
DGALQAGGKTIAVLGSGLANIYPARHRSLAQRVIEHGALVSEFRPNAKPRPENFPRRNRIISGLSLGVLVVEAAKKSGSL
ITARYALEQGREVFALPASINAPNACGGNQLIRHGACLVEKTKDVLDEIQSLLDWSINQSTDLFSTLNDEEELPFPQLLA
NVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=62044 N646_RS10660 WP_017821579.1 2317443..2318552(-) (dprA) [Vibrio alginolyticus NBRC 15630 = ATCC 17749]
ATGAATCGACGAAATAACGATGATCTCGCTGCCTGGTTAAAACTGAGTTGTTTACCAGGCATTGGCGGCGTCAAAATGAA
TAAGCTACTGGCAAGAGACACGCCACGTAACATCGTAAACTTCTCTCCTGAACAGCTACAACAACTTGGGTTAACAACTA
AGCAAATTCAAGCTTGGGCTTCAACAGATAAAGAAGTCGATGCTTGTTTAAGCTGGCTTGAGGCTTCTACAAATCATCAT
ATCCTGACACTGACTGACCCGCGTTATCCACCTCAACTCAAACAAATCGTTGCACCGCCACCTCTACTTTTTGTTCAAGG
AAACCCTACTTGTCTCTCTCAGCCACAAATCGCGATGGTTGGCAGTCGAAATGCGAGTATTGATGGATTACAGCATGCAC
GTCAGTTTGCTGCAGAGTTTGTTCAGCACGATTTTATTGTCACCAGTGGTCTCGCTTTAGGCATTGATGGTCATGCGCAT
GATGGTGCGTTGCAAGCGGGTGGTAAGACGATTGCGGTGCTAGGATCTGGTTTAGCAAATATTTATCCAGCACGTCATCG
TAGTTTAGCGCAACGTGTTATTGAACACGGGGCTTTGGTGTCTGAGTTTCGGCCTAATGCCAAGCCGCGCCCAGAAAACT
TCCCGCGTCGTAATCGTATTATTAGTGGATTATCGCTTGGTGTACTGGTCGTCGAGGCGGCGAAAAAGAGCGGCTCGTTA
ATTACAGCTCGTTACGCGCTTGAGCAAGGTCGAGAAGTATTTGCGCTGCCAGCGTCAATCAATGCCCCCAATGCCTGCGG
TGGAAACCAGTTGATACGTCATGGCGCTTGCCTCGTAGAAAAGACGAAAGATGTCTTAGATGAAATACAGTCCTTGCTTG
ATTGGTCTATTAATCAGAGTACCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGTTAGAACTCTCTGGGCATGTCGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(317-362)

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

82.927

100

0.829
  dprA Vibrio cholerae strain A1552

57.027

100

0.572
  dprA Glaesserella parasuis strain SC1401

46.505

100

0.469
  dprA Legionella pneumophila strain ERS1305867

44.875

97.832

0.439
  dprA Haemophilus influenzae Rd KW20

44.957

94.038

0.423
  dprA Neisseria meningitidis strain C311

37.121

100

0.398
  dprA Neisseria meningitidis MC58

37.121

100

0.398
  dprA Neisseria gonorrhoeae MS11

35.787

100

0.382
  dprA Neisseria gonorrhoeae strain FA1090

35.533

100

0.379

Multiple sequence alignment