Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NW975_RS06990 Genome accession   NZ_CP102971
Coordinates   1474313..1474939 (+) Length   208 a.a.
NCBI ID   WP_258413870.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 08-G-E     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1469313..1479939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW975_RS06955 (NW975_06955) - 1470297..1470629 (-) 333 WP_000516798.1 DUF4889 domain-containing protein -
  NW975_RS06960 (NW975_06960) - 1470713..1471858 (-) 1146 WP_000487154.1 class I SAM-dependent RNA methyltransferase -
  NW975_RS06970 (NW975_06970) gpsB 1472509..1472853 (-) 345 WP_001286320.1 cell division regulator GpsB -
  NW975_RS06975 (NW975_06975) - 1472867..1473430 (-) 564 WP_000241308.1 DUF1273 domain-containing protein -
  NW975_RS06980 (NW975_06980) - 1473423..1473773 (-) 351 WP_001000806.1 YppE family protein -
  NW975_RS06985 (NW975_06985) - 1473828..1474007 (-) 180 WP_001788819.1 hypothetical protein -
  NW975_RS06990 (NW975_06990) recU 1474313..1474939 (+) 627 WP_258413870.1 Holliday junction resolvase RecU Machinery gene
  NW975_RS06995 (NW975_06995) - 1474936..1477119 (+) 2184 WP_258413871.1 transglycosylase domain-containing protein -
  NW975_RS07000 (NW975_07000) - 1477685..1478026 (-) 342 WP_258413872.1 YpoC family protein -
  NW975_RS07005 (NW975_07005) nth 1478031..1478690 (-) 660 WP_258413873.1 endonuclease III -
  NW975_RS07010 (NW975_07010) - 1478680..1479366 (-) 687 WP_258413875.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24442.87 Da        Isoelectric Point: 9.8490

>NTDB_id=620422 NW975_RS06990 WP_258413870.1 1474313..1474939(+) (recU) [Staphylococcus aureus strain 08-G-E]
MNYPNGKPYRKNSAIDGGKKTAAFSNIEYGGRGMSLEKDIEHSNTFYLKSDIAVIHKKPTPVQIVNVNYPKRSKAVINEA
YFRTPSTTDYNGVYQGYYIDFEAKETKNKTSFPLNNIHDHQVEHMKNAYQQKGIVFLMIRFKTLDEVYLLPYSKFKVFWK
RYKDNIKKSITVDEIRKNGYHIPYQYQPRLDYLKAVDKLILDESEDRV

Nucleotide


Download         Length: 627 bp        

>NTDB_id=620422 NW975_RS06990 WP_258413870.1 1474313..1474939(+) (recU) [Staphylococcus aureus strain 08-G-E]
ATGAATTATCCAAATGGTAAACCATATCGTAAAAATAGTGCTATAGACGGAGGGAAAAAGACCGCTGCCTTTAGTAATAT
TGAGTATGGTGGACGTGGTATGTCACTTGAAAAAGATATCGAACATTCAAATACGTTTTATCTTAAAAGCGACATTGCAG
TTATTCACAAAAAGCCTACGCCAGTACAAATAGTTAATGTCAACTATCCTAAGCGGAGTAAAGCTGTGATTAACGAAGCT
TATTTTCGTACACCTTCAACAACTGATTACAACGGCGTTTATCAAGGTTATTATATTGATTTTGAAGCAAAGGAAACTAA
AAACAAGACGTCCTTTCCTTTAAATAATATTCATGACCATCAAGTCGAACATATGAAAAATGCATATCAACAAAAAGGTA
TTGTGTTTTTAATGATTCGTTTTAAAACGCTAGATGAAGTTTATCTTTTACCCTATTCAAAATTCAAAGTATTTTGGAAG
AGATATAAAGATAATATTAAAAAGTCTATAACAGTTGATGAAATACGAAAAAATGGTTACCATATTCCTTATCAGTATCA
ACCAAGATTAGACTATCTAAAAGCAGTTGATAAGTTGATATTAGATGAAAGTGAGGACCGCGTATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(32-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

53.14

99.519

0.529