Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | N646_RS09085 | Genome accession | NC_022349 |
| Coordinates | 1987514..1988089 (-) | Length | 191 a.a. |
| NCBI ID | WP_017821732.1 | Uniprot ID | A0A2I3CBW9 |
| Organism | Vibrio alginolyticus NBRC 15630 = ATCC 17749 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1982514..1993089
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N646_RS09060 (N646_1838) | aroB | 1982813..1983913 (-) | 1101 | WP_005381318.1 | 3-dehydroquinate synthase | - |
| N646_RS09065 (N646_1839) | aroK | 1983946..1984464 (-) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| N646_RS09070 (N646_1840) | pilQ | 1984652..1986397 (-) | 1746 | WP_005382765.1 | type IV pilus secretin PilQ | Machinery gene |
| N646_RS09075 (N646_1841) | pilP | 1986423..1986938 (-) | 516 | WP_005382766.1 | pilus assembly protein PilP | Machinery gene |
| N646_RS09080 (N646_1842) | pilO | 1986928..1987521 (-) | 594 | WP_017633532.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| N646_RS09085 (N646_1843) | pilN | 1987514..1988089 (-) | 576 | WP_017821732.1 | PilN domain-containing protein | Machinery gene |
| N646_RS09090 (N646_1844) | pilM | 1988073..1989089 (-) | 1017 | WP_017821733.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| N646_RS09095 (N646_1845) | - | 1989234..1991795 (+) | 2562 | WP_017821734.1 | penicillin-binding protein 1A | - |
| N646_RS09100 (N646_1846) | oxyR | 1991849..1992760 (-) | 912 | WP_005381326.1 | DNA-binding transcriptional regulator OxyR | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 22349.86 Da Isoelectric Point: 7.4658
>NTDB_id=62040 N646_RS09085 WP_017821732.1 1987514..1988089(-) (pilN) [Vibrio alginolyticus NBRC 15630 = ATCC 17749]
MLYRINLLPWRESQREEHRRRFISLVALGMLVAVGIQWGIGKFFEYQQDQQQERLDYLTHYIAELDQRIEAMKIAEQEHS
KILERLKVVEGLQNGRNKTTEFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPKLATMLDNMERSAKLNDVEMHSIV
HGKARFGKEFQTFKVSFMFKVTEKKLEAQRG
MLYRINLLPWRESQREEHRRRFISLVALGMLVAVGIQWGIGKFFEYQQDQQQERLDYLTHYIAELDQRIEAMKIAEQEHS
KILERLKVVEGLQNGRNKTTEFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPKLATMLDNMERSAKLNDVEMHSIV
HGKARFGKEFQTFKVSFMFKVTEKKLEAQRG
Nucleotide
Download Length: 576 bp
>NTDB_id=62040 N646_RS09085 WP_017821732.1 1987514..1988089(-) (pilN) [Vibrio alginolyticus NBRC 15630 = ATCC 17749]
GTGCTTTATCGCATTAATTTACTTCCTTGGCGAGAGAGTCAAAGAGAAGAGCACCGACGTCGTTTCATCAGTTTGGTCGC
ATTAGGCATGTTGGTCGCTGTTGGCATCCAGTGGGGTATTGGAAAGTTTTTTGAGTACCAACAAGATCAACAACAGGAGC
GGCTCGATTACCTCACTCACTACATTGCCGAACTCGACCAGCGTATTGAAGCAATGAAAATTGCAGAGCAAGAGCACAGC
AAAATCCTCGAACGTCTAAAGGTCGTTGAAGGTTTACAAAACGGACGAAACAAAACGACCGAGTTCATGAACTTAATGCC
TGCCGTTATCCCTGAAGGTGTATATGTCGACAAGATCAAAATGAATGATCTGGAAATTGAGATCTCTGGGATCTCTGATA
GCACTCCAAAACTTGCCACGATGCTGGACAACATGGAGCGCTCGGCCAAGTTGAACGACGTAGAAATGCATTCCATCGTT
CACGGCAAAGCCCGTTTTGGGAAAGAGTTTCAAACATTCAAAGTGTCTTTCATGTTCAAAGTAACGGAGAAGAAATTGGA
GGCTCAACGTGGTTGA
GTGCTTTATCGCATTAATTTACTTCCTTGGCGAGAGAGTCAAAGAGAAGAGCACCGACGTCGTTTCATCAGTTTGGTCGC
ATTAGGCATGTTGGTCGCTGTTGGCATCCAGTGGGGTATTGGAAAGTTTTTTGAGTACCAACAAGATCAACAACAGGAGC
GGCTCGATTACCTCACTCACTACATTGCCGAACTCGACCAGCGTATTGAAGCAATGAAAATTGCAGAGCAAGAGCACAGC
AAAATCCTCGAACGTCTAAAGGTCGTTGAAGGTTTACAAAACGGACGAAACAAAACGACCGAGTTCATGAACTTAATGCC
TGCCGTTATCCCTGAAGGTGTATATGTCGACAAGATCAAAATGAATGATCTGGAAATTGAGATCTCTGGGATCTCTGATA
GCACTCCAAAACTTGCCACGATGCTGGACAACATGGAGCGCTCGGCCAAGTTGAACGACGTAGAAATGCATTCCATCGTT
CACGGCAAAGCCCGTTTTGGGAAAGAGTTTCAAACATTCAAAGTGTCTTTCATGTTCAAAGTAACGGAGAAGAAATTGGA
GGCTCAACGTGGTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
82.199 |
100 |
0.822 |
| pilN | Vibrio cholerae strain A1552 |
63.277 |
92.67 |
0.586 |