Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NW975_RS03575 Genome accession   NZ_CP102971
Coordinates   759817..760899 (+) Length   360 a.a.
NCBI ID   WP_252570331.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 08-G-E     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 754817..765899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW975_RS03555 (NW975_03555) - 755195..756265 (-) 1071 WP_000460983.1 GGDEF domain-containing protein -
  NW975_RS03560 (NW975_03560) - 756583..757638 (+) 1056 WP_000258150.1 MraY family glycosyltransferase -
  NW975_RS03565 (NW975_03565) - 757802..758443 (-) 642 WP_000192947.1 YigZ family protein -
  NW975_RS03570 (NW975_03570) fakB1 758587..759453 (+) 867 WP_258414081.1 fatty acid kinase binding subunit FakB1 -
  NW975_RS03575 (NW975_03575) comFA 759817..760899 (+) 1083 WP_252570331.1 DEAD/DEAH box helicase Machinery gene
  NW975_RS03580 (NW975_03580) - 760892..761566 (+) 675 WP_258414082.1 ComF family protein -
  NW975_RS03585 (NW975_03585) raiA 761627..762199 (+) 573 WP_000617735.1 ribosome-associated translation inhibitor RaiA -
  NW975_RS03590 (NW975_03590) secA 762613..765144 (+) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  NW975_RS03595 (NW975_03595) - 765186..765290 (+) 105 WP_001790092.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42062.57 Da        Isoelectric Point: 9.5951

>NTDB_id=620392 NW975_RS03575 WP_252570331.1 759817..760899(+) (comFA) [Staphylococcus aureus strain 08-G-E]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSRQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKNLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYCYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=620392 NW975_RS03575 WP_252570331.1 759817..760899(+) (comFA) [Staphylococcus aureus strain 08-G-E]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAAGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGACAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAATTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACAATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATTGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTCCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367