Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LJF42_RS04225 Genome accession   NZ_CP085810
Coordinates   833546..834151 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Schwarzengrund strain Moltres     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 828546..839151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJF42_RS04205 (LJF42_04205) - 828941..830701 (-) 1761 WP_000156445.1 AAA family ATPase -
  LJF42_RS04210 (LJF42_04210) matP 830887..831339 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  LJF42_RS04215 (LJF42_04215) ompA 831411..832463 (-) 1053 WP_001562588.1 porin OmpA -
  LJF42_RS04220 (LJF42_04220) sulA 832820..833329 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  LJF42_RS04225 (LJF42_04225) sxy/tfoX 833546..834151 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  LJF42_RS04230 (LJF42_04230) yccS 834138..836291 (-) 2154 WP_000950870.1 YccS family putative transporter -
  LJF42_RS04235 (LJF42_04235) - 836310..836753 (-) 444 WP_001261221.1 YccF domain-containing protein -
  LJF42_RS04240 (LJF42_04240) helD 836877..838931 (+) 2055 WP_000420528.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=620383 LJF42_RS04225 WP_001202375.1 833546..834151(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Schwarzengrund strain Moltres]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=620383 LJF42_RS04225 WP_001202375.1 833546..834151(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Schwarzengrund strain Moltres]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACAGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751