Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LJF43_RS13635 Genome accession   NZ_CP085809
Coordinates   2748276..2748881 (-) Length   201 a.a.
NCBI ID   WP_001202371.1    Uniprot ID   A0A716I2X5
Organism   Salmonella enterica subsp. enterica serovar Typhimurium strain Raikou     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2743276..2753881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJF43_RS13620 (LJF43_13625) helD 2743493..2745547 (-) 2055 WP_000420526.1 DNA helicase IV -
  LJF43_RS13625 (LJF43_13630) - 2745671..2746117 (+) 447 WP_001261222.1 YccF domain-containing protein -
  LJF43_RS13630 (LJF43_13635) yccS 2746136..2748289 (+) 2154 WP_000950867.1 YccS family putative transporter -
  LJF43_RS13635 (LJF43_13640) sxy/tfoX 2748276..2748881 (-) 606 WP_001202371.1 TfoX/Sxy family DNA transformation protein Regulator
  LJF43_RS13640 (LJF43_13645) sulA 2749098..2749607 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  LJF43_RS13645 (LJF43_13650) ompA 2749962..2751014 (+) 1053 WP_010989142.1 porin OmpA -
  LJF43_RS13650 (LJF43_13655) matP 2751086..2751538 (-) 453 WP_000877174.1 macrodomain Ter protein MatP -
  LJF43_RS13655 (LJF43_13660) - 2751724..2753484 (+) 1761 WP_000156455.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23175.88 Da        Isoelectric Point: 8.1288

>NTDB_id=620367 LJF43_RS13635 WP_001202371.1 2748276..2748881(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Typhimurium strain Raikou]
MRALSYDRIYESQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=620367 LJF43_RS13635 WP_001202371.1 2748276..2748881(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Typhimurium strain Raikou]
ATGAGAGCACTCTCTTATGACAGGATCTATGAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACTGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCCCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGTTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A716I2X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.377

99.005

0.746