Detailed information NTG0062031

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: N646_RS07980
• Genome accession: NC_022349
• Coordinates: 1768611..1769597 (-)
• Length: 328 a.a.
• NCBI ID: WP_005380887.1
• Uniprot ID: A0A2I3CB39
• Organism: Vibrio alginolyticus NBRC 15630 = ATCC 17749
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1763611..1774597

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N646_RS07965 (N646_1644)	recA	1764156..1765199 (-)	1044	WP_005380874.1	recombinase RecA	Machinery gene
N646_RS07970 (N646_1645)	pncC	1765400..1765882 (-)	483	WP_017821622.1	nicotinamide-nucleotide amidase	-
N646_RS07975 (N646_1646)	mutS	1765967..1768528 (+)	2562	WP_017821623.1	DNA mismatch repair protein MutS	-
N646_RS07980 (N646_1647)	rpoS	1768611..1769597 (-)	987	WP_005380887.1	RNA polymerase sigma factor RpoS	Regulator
N646_RS07985 (N646_1648)	-	1769678..1770601 (-)	924	WP_017633546.1	peptidoglycan DD-metalloendopeptidase family protein	-
N646_RS07990 (N646_1649)	-	1770615..1771241 (-)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
N646_RS07995 (N646_1650)	surE	1771241..1772017 (-)	777	WP_005380894.1	5'/3'-nucleotidase SurE	-
N646_RS08000 (N646_1651)	truD	1772017..1773060 (-)	1044	WP_017821624.1	tRNA pseudouridine(13) synthase TruD	-
N646_RS08005 (N646_1652)	ispF	1773106..1773582 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
N646_RS08010 (N646_1653)	ispD	1773597..1774304 (-)	708	WP_017821625.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
N646_RS08015 (N646_1654)	ftsB	1774306..1774587 (-)	282	WP_017821626.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37412.31 Da
• Isoelectric Point: 4.7299

>NTDB_id=62031 N646_RS07980 WP_005380887.1 1768611..1769597(-) (rpoS) [Vibrio alginolyticus NBRC 15630 = ATCC 17749]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=62031 N646_RS07980 WP_005380887.1 1768611..1769597(-) (rpoS) [Vibrio alginolyticus NBRC 15630 = ATCC 17749]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAGTTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTCGATTTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACGTGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCACGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAAGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGTCGCTTCGGCCTACTAGGCTACGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTGTTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

3D structure

• AlphaFold DB: A0A2I3CB39

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854