Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NW983_RS03650 Genome accession   NZ_CP102970
Coordinates   768605..769687 (+) Length   360 a.a.
NCBI ID   WP_252570331.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 09-G-F     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 763605..774687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW983_RS03630 (NW983_03630) - 763982..765052 (-) 1071 WP_000460983.1 GGDEF domain-containing protein -
  NW983_RS03635 (NW983_03635) - 765370..766425 (+) 1056 WP_000258150.1 MraY family glycosyltransferase -
  NW983_RS03640 (NW983_03640) - 766590..767231 (-) 642 WP_000192949.1 YigZ family protein -
  NW983_RS03645 (NW983_03645) fakB1 767375..768241 (+) 867 WP_000686342.1 fatty acid kinase binding subunit FakB1 -
  NW983_RS03650 (NW983_03650) comFA 768605..769687 (+) 1083 WP_252570331.1 DEAD/DEAH box helicase Machinery gene
  NW983_RS03655 (NW983_03655) - 769680..770354 (+) 675 WP_001057968.1 ComF family protein -
  NW983_RS03660 (NW983_03660) raiA 770415..770987 (+) 573 WP_000617735.1 ribosome-associated translation inhibitor RaiA -
  NW983_RS03665 (NW983_03665) secA 771401..773932 (+) 2532 WP_258412008.1 preprotein translocase subunit SecA -
  NW983_RS03670 (NW983_03670) - 773974..774072 (+) 99 WP_031789464.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42062.57 Da        Isoelectric Point: 9.5951

>NTDB_id=620303 NW983_RS03650 WP_252570331.1 768605..769687(+) (comFA) [Staphylococcus aureus strain 09-G-F]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSRQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKNLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYCYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=620303 NW983_RS03650 WP_252570331.1 768605..769687(+) (comFA) [Staphylococcus aureus strain 09-G-F]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAAGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGACAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAATTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACAATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATTGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTCCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367