Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   N646_RS07860 Genome accession   NC_022349
Coordinates   1746705..1747223 (-) Length   172 a.a.
NCBI ID   WP_017820391.1    Uniprot ID   A0A2I3C9Z1
Organism   Vibrio alginolyticus NBRC 15630 = ATCC 17749     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1741705..1752223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N646_RS07835 (N646_1625) rimM 1741795..1742343 (-) 549 WP_005379964.1 ribosome maturation factor RimM -
  N646_RS07840 (N646_1626) rpsP 1742373..1742621 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  N646_RS07845 (N646_1627) ffh 1742831..1744213 (-) 1383 WP_005385423.1 signal recognition particle protein -
  N646_RS07850 (N646_1628) - 1744438..1745232 (+) 795 WP_005379950.1 inner membrane protein YpjD -
  N646_RS07855 (N646_1629) - 1745357..1746637 (+) 1281 WP_005379948.1 HlyC/CorC family transporter -
  N646_RS07860 (N646_1630) luxS 1746705..1747223 (-) 519 WP_017820391.1 S-ribosylhomocysteine lyase Regulator
  N646_RS07865 (N646_1631) - 1747308..1747913 (-) 606 WP_005379943.1 hypothetical protein -
  N646_RS07870 (N646_1632) gshA 1747937..1749505 (-) 1569 WP_017820390.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19074.83 Da        Isoelectric Point: 4.8443

>NTDB_id=62028 N646_RS07860 WP_017820391.1 1746705..1747223(-) (luxS) [Vibrio alginolyticus NBRC 15630 = ATCC 17749]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQNKIPELNEYQCGTAAMHSLKEAQQIAKNILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=62028 N646_RS07860 WP_017820391.1 1746705..1747223(-) (luxS) [Vibrio alginolyticus NBRC 15630 = ATCC 17749]
ATGCCTTTACTCGATAGTTTTACCGTGGACCACACTCGTATGAACGCACCCGCTGTACGAGTGGCGAAAACCATGCAGAC
CCCAAAAGGGGATACGATTACTGTTTTCGACTTACGCTTTACTGCGCCAAACAAAGACATTCTTTCTGAAAAAGGTATTC
ACACCCTAGAGCACCTTTATGCAGGCTTTATGCGTAATCACCTAAACGGTGATTCTGTTGAGATCATCGATATTTCGCCT
ATGGGTTGCCGCACAGGTTTTTACATGAGCCTGATTGGCACACCATCAGAGCAGCAAGTCGCAGATGCTTGGATTGCAGC
AATGGAAGATGTGCTGAAGGTAGAAAGTCAGAATAAGATCCCTGAACTTAACGAATACCAATGCGGCACGGCAGCAATGC
ACTCTTTAAAAGAAGCACAACAGATCGCAAAGAACATTTTGGATGCTGGTGTTTCGGTGAACAAAAATGATGAACTTGCT
TTGCCTGAGTCGATGTTAAAAGAGTTGCGCATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3C9Z1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866

Multiple sequence alignment