Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   N646_RS05615 Genome accession   NC_022349
Coordinates   1266364..1267770 (-) Length   468 a.a.
NCBI ID   WP_017821372.1    Uniprot ID   A0A2I3C788
Organism   Vibrio alginolyticus NBRC 15630 = ATCC 17749     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1261364..1272770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N646_RS05580 (N646_1167) moaE 1261870..1262325 (-) 456 WP_017821374.1 molybdopterin synthase catalytic subunit MoaE -
  N646_RS05585 (N646_1168) moaD 1262327..1262584 (-) 258 WP_005380780.1 molybdopterin synthase sulfur carrier subunit -
  N646_RS05590 (N646_1169) moaC 1262581..1263060 (-) 480 WP_005380779.1 cyclic pyranopterin monophosphate synthase MoaC -
  N646_RS05595 (N646_1170) moaB 1263087..1263599 (-) 513 WP_005388935.1 molybdenum cofactor biosynthesis protein B -
  N646_RS05600 (N646_1171) moaA 1263701..1264690 (-) 990 WP_005380776.1 GTP 3',8-cyclase MoaA -
  N646_RS05605 (N646_1172) - 1264989..1265885 (+) 897 WP_017821373.1 YvcK family protein -
  N646_RS05610 (N646_1173) luxU 1266023..1266367 (-) 345 WP_005380770.1 quorum-sensing phosphorelay protein LuxU -
  N646_RS05615 (N646_1174) luxO 1266364..1267770 (-) 1407 WP_017821372.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  N646_RS05620 (N646_1175) uvrB 1268061..1270091 (-) 2031 WP_017636056.1 excinuclease ABC subunit UvrB -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 52107.70 Da        Isoelectric Point: 6.2547

>NTDB_id=62022 N646_RS05615 WP_017821372.1 1266364..1267770(-) (luxO) [Vibrio alginolyticus NBRC 15630 = ATCC 17749]
MQQKPEGPKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMNAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQSYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKSFIRFAPDVIERFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPS
SVAKLIEPKAMTASEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=62022 N646_RS05615 WP_017821372.1 1266364..1267770(-) (luxO) [Vibrio alginolyticus NBRC 15630 = ATCC 17749]
ATGCAACAAAAACCCGAAGGCCCAAAGTCTCGTTACCTTTTAATGGTCGAGGACACCGCATCTGTTGCGGCTCTGTACCG
CTCATACCTGACACCGCTTGGCATAGATATCAATATTGTCGGCACAGGTAGGGATGCCATTGAGAGCCTAAATCATCGAA
TTCCAGATCTTATTTTACTCGATCTCCGTCTGCCAGATATGACGGGGATGGACGTTTTACATGCCGTTAAAAAGAGTCAT
CCCGACGTACCTATAATTTTTATGAACGCTCACGGTTCTATCGATACCGCTGTCGAGGCCATGCGTCATGGCTCACAAGA
CTTTCTAATTAAACCGTGTGAAGCAGACCGTTTACGTGTCACGGTTAACAATGCAATTCGTAAAGCGACCAAGCTAAAAA
ATGAAGCCGATAATCCAGGCAATCAGAGCTATCAGGGGTTTATCGGCAGTAGCCAAACCATGCAGCAGGTTTACCGTACG
ATAGATTCAGCGGCGAGCAGTAAAGCGAGTATTTTTATCACAGGTGAAAGTGGAACTGGTAAAGAGGTATGTGCCGAGGC
TATTCACGCAGCAAGTAAACGTGGTGACAAACCTTTTATTGCAATTAACTGTGCTGCAATTCCAAAAGATTTGATTGAGA
GTGAACTGTTTGGTCACGTAAAAGGGGCCTTTACTGGCGCTGCGAATGATCGTCAAGGGGCAGCTGAGTTAGCGGATGGC
GGCACACTTTTTCTAGATGAGCTTTGTGAGATGGACTTGGATTTACAAACCAAGTTGCTACGATTTATTCAAACGGGCAC
ATTCCAAAAAGTGGGTTCCTCAAAAATGAAGAGCGTGGATGTGCGCTTTGTTTGTGCCACTAACCGTGATCCCTGGAAAG
AGGTACAAGAAGGTCGATTCCGTGAAGATTTGTACTATCGTTTGTATGTCATTCCTTTGCATTTACCGCCTTTACGCGAA
CGAGGCGAAGATGTTATTGAAATTGCATACTCACTGCTAGGTTACATGTCACACGAAGAAGGAAAAAGCTTCATACGTTT
TGCGCCAGATGTCATCGAGCGATTCAACAGCTATGAGTGGCCGGGTAACGTTCGTCAGTTACAAAACGTGCTACGCAATA
TCGTTGTTCTAAACAACGGTAAAGAGATTACGTTGGACATGTTACCGCCACCGTTGAATCAACCGCTTGACCGTCCGTCG
TCTGTGGCTAAATTAATTGAGCCGAAAGCGATGACCGCATCTGAGATTATGCCATTATGGATGACGGAAAAAATGGCAAT
CGAGCAAGCGATTGAAGCATGTGATGGCAATATTCCTCGAGCGGCGGGATACCTTGATGTCAGTCCGTCGACGATTTACC
GCAAGTTACAGGCATGGAACGGCAAGGAAGAGCGGCAAAAAGTATGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3C788

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.192

95.94

0.827

Multiple sequence alignment