Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   NW947_RS06535 Genome accession   NZ_CP102967
Coordinates   1334691..1336679 (+) Length   662 a.a.
NCBI ID   WP_258416781.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 17-H-61     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1329691..1341679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW947_RS06495 (NW947_06495) rpmG 1329772..1329921 (+) 150 WP_001265708.1 50S ribosomal protein L33 -
  NW947_RS06500 (NW947_06500) rpsN 1330375..1330644 (+) 270 WP_001085655.1 30S ribosomal protein S14 -
  NW947_RS06505 (NW947_06505) guaC 1330801..1331778 (+) 978 WP_000688126.1 GMP reductase -
  NW947_RS06515 (NW947_06515) - 1331800..1332816 (+) 1017 WP_001789887.1 CAP domain-containing protein -
  NW947_RS06520 (NW947_06520) dinR/lexA 1333196..1333819 (-) 624 WP_001208760.1 transcriptional repressor LexA Regulator
  NW947_RS06525 (NW947_06525) sosA 1333962..1334195 (+) 234 WP_000499647.1 DNA damage-induced cell division inhibitor SosA -
  NW947_RS06530 (NW947_06530) - 1334331..1334570 (+) 240 WP_000071351.1 DUF896 domain-containing protein -
  NW947_RS06535 (NW947_06535) recP/tkt 1334691..1336679 (+) 1989 WP_258416781.1 transketolase Machinery gene
  NW947_RS06540 (NW947_06540) - 1336957..1337199 (+) 243 WP_000246909.1 YneF family protein -
  NW947_RS06545 (NW947_06545) - 1337186..1337284 (+) 99 WP_001789897.1 hypothetical protein -
  NW947_RS06550 (NW947_06550) - 1337378..1337845 (+) 468 WP_000966142.1 CcdC family protein -
  NW947_RS06555 (NW947_06555) sbcD 1337969..1339090 (+) 1122 WP_061838456.1 exonuclease subunit SbcD -

Sequence

Protein


Download         Length: 662 a.a.        Molecular weight: 72235.87 Da        Isoelectric Point: 4.7072

>NTDB_id=620153 NW947_RS06535 WP_258416781.1 1334691..1336679(+) (recP/tkt) [Staphylococcus aureus strain 17-H-61]
MFNEKDQLAVDTLRALSIDTIEKANSGHPGLPMGAAPMAYTLWTRHLNFNPQSKDYFNRDRFVLSAGHGSALLYSLLHVS
GSLELEELKQFRQWGSKTPGHPEYRHTDGVEVTTGPLGQGFAMSVGLALAEDHLAGKFNKEGYNVVDHYTYVLASDGDLM
EGISHEAASFAGHNKLSKLVVLYDSNDISLDGELNKAFSENTKARFEAYGWNYLLVKDGNDLEEIDKAITTAKSQEGPTI
IEVKTTIGFGSPNKAGTNGVHGAPLGEVERKLTFENYGLDPEKRFNVSEEVYEIFQNTMLKRANEDESQWNSLLEKYAET
YPELAEEFKLAISGKLPKNYKDELPRFELGHNGASRADSGTVIQAISKTVPSFFGGSADLAGSNKSNVNDATDYSSETPE
GKNVWFGVREFAMGAAVNGMAAHGGLHPYGATFFVFSDYLKPALRLSSIMGLNATFIFTHDSIAVGEDGPTHEPIEQLAG
LRAIPNMNVIRPADGNETRVAWEVALESESTPTSLVLTRQNLPVLDVPEDVVEEGVRKGAYTVYGSEETPEFLLLASGSE
VSLAVEAAKDLEKQGKSVRVVSMPNWNAFELQSEEYKESVIPSSVTKRVAIEMASPLGWHKYVGTAGKVIAIDGFGASAP
GDLVVEKYGFTKENILNQVMSL

Nucleotide


Download         Length: 1989 bp        

>NTDB_id=620153 NW947_RS06535 WP_258416781.1 1334691..1336679(+) (recP/tkt) [Staphylococcus aureus strain 17-H-61]
ATGTTTAATGAAAAAGATCAATTAGCTGTTGATACGCTACGTGCACTAAGTATCGACACAATCGAAAAAGCGAATTCTGG
TCATCCAGGATTACCTATGGGAGCTGCCCCAATGGCTTACACTTTGTGGACACGTCATCTGAATTTTAATCCACAATCTA
AAGATTACTTCAATAGAGACCGTTTCGTATTATCTGCAGGGCATGGTTCAGCATTATTGTATAGCTTGTTACATGTTTCT
GGTAGTTTAGAATTAGAAGAATTAAAGCAATTTAGACAATGGGGTTCTAAAACACCAGGTCATCCTGAATACAGACATAC
AGATGGTGTAGAAGTTACTACCGGACCACTTGGACAAGGTTTTGCTATGTCAGTAGGATTAGCTTTAGCAGAAGATCACC
TAGCAGGGAAATTTAATAAAGAAGGATATAATGTTGTAGATCATTACACATATGTATTAGCTTCTGACGGTGATTTAATG
GAAGGTATATCGCATGAAGCAGCTTCATTTGCTGGACATAATAAATTAAGTAAATTAGTTGTTTTATACGATTCAAATGA
TATTTCATTAGATGGCGAATTAAACAAAGCTTTTTCTGAAAACACAAAAGCTCGTTTTGAAGCATATGGTTGGAATTACT
TACTAGTTAAAGATGGTAATGATTTAGAAGAAATTGATAAAGCGATTACTACAGCTAAATCTCAAGAAGGACCAACGATT
ATTGAAGTTAAAACAACAATCGGATTTGGTTCACCGAATAAAGCAGGAACTAATGGTGTTCATGGGGCACCTTTAGGTGA
AGTTGAAAGAAAATTAACATTCGAAAATTACGGTTTAGATCCTGAAAAACGTTTTAATGTTTCAGAAGAGGTATACGAAA
TTTTCCAAAATACTATGTTAAAACGTGCTAATGAAGATGAATCTCAATGGAATTCATTATTAGAAAAATATGCAGAAACA
TATCCTGAATTAGCAGAAGAATTTAAATTAGCGATTAGTGGTAAATTGCCTAAAAATTATAAGGATGAATTACCACGTTT
TGAACTGGGTCATAATGGTGCATCTCGTGCTGATTCTGGTACTGTTATTCAAGCAATCAGTAAAACTGTCCCTTCATTCT
TTGGTGGATCAGCAGACCTTGCTGGTTCAAACAAATCCAATGTAAATGATGCAACAGATTATAGTTCTGAAACACCTGAA
GGTAAAAATGTGTGGTTTGGTGTACGTGAATTTGCTATGGGTGCTGCTGTAAATGGTATGGCTGCACATGGAGGTTTACA
TCCATATGGTGCAACATTCTTCGTATTTAGTGATTATTTAAAACCAGCGTTACGTTTATCATCAATTATGGGATTAAATG
CAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAACAATTAGCTGGA
TTAAGAGCTATTCCAAATATGAATGTTATCCGTCCTGCTGATGGTAATGAAACAAGAGTAGCATGGGAAGTTGCCTTAGA
ATCTGAATCTACACCTACTTCATTAGTATTGACACGTCAAAACTTACCGGTTTTAGATGTACCAGAAGATGTAGTTGAAG
AAGGCGTTCGAAAAGGTGCCTATACAGTTTATGGCTCTGAAGAGACACCAGAATTCCTATTATTAGCTTCAGGTTCAGAA
GTTAGTCTTGCAGTTGAAGCTGCTAAAGATCTTGAAAAACAAGGTAAATCAGTGCGTGTTGTTTCAATGCCTAACTGGAA
TGCATTTGAACTACAATCTGAAGAATATAAAGAATCAGTTATTCCATCAAGCGTAACAAAACGTGTTGCGATTGAAATGG
CTTCACCGCTTGGATGGCATAAATATGTAGGTACTGCAGGTAAAGTTATTGCTATTGACGGCTTTGGCGCAAGTGCACCT
GGCGATTTAGTAGTTGAAAAATATGGATTTACTAAAGAAAATATCTTAAACCAAGTTATGAGCTTATAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(548-655)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-337)

Transketolase, pyrimidine binding domain (Transket_pyr)

(359-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

55.105

100

0.554