Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NW955_RS07450 Genome accession   NZ_CP102966
Coordinates   1557991..1559670 (-) Length   559 a.a.
NCBI ID   WP_000942210.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 29-P-01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1552991..1564670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW955_RS07430 (NW955_07430) - 1553141..1554415 (-) 1275 WP_209205911.1 dihydrolipoamide acetyltransferase family protein -
  NW955_RS07435 (NW955_07435) - 1554428..1555411 (-) 984 WP_258410037.1 alpha-ketoacid dehydrogenase subunit beta -
  NW955_RS07440 (NW955_07440) - 1555411..1556403 (-) 993 WP_238614787.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  NW955_RS07445 (NW955_07445) lpdA 1556419..1557840 (-) 1422 WP_258412554.1 dihydrolipoyl dehydrogenase -
  NW955_RS07450 (NW955_07450) recN 1557991..1559670 (-) 1680 WP_000942210.1 DNA repair protein RecN Machinery gene
  NW955_RS07455 (NW955_07455) argR 1559686..1560138 (-) 453 WP_001124985.1 transcriptional regulator ArgR -
  NW955_RS07460 (NW955_07460) - 1560569..1561450 (-) 882 WP_258410040.1 polyprenyl synthetase family protein -
  NW955_RS07465 (NW955_07465) - 1561428..1561658 (-) 231 WP_000159865.1 exodeoxyribonuclease VII small subunit -
  NW955_RS07470 (NW955_07470) xseA 1561651..1562988 (-) 1338 WP_001286928.1 exodeoxyribonuclease VII large subunit -
  NW955_RS07475 (NW955_07475) nusB 1563005..1563394 (-) 390 WP_000087385.1 transcription antitermination factor NusB -
  NW955_RS07480 (NW955_07480) - 1563454..1563816 (-) 363 WP_000241588.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 64265.84 Da        Isoelectric Point: 4.7316

>NTDB_id=620071 NW955_RS07450 WP_000942210.1 1557991..1559670(-) (recN) [Staphylococcus aureus strain 29-P-01]
MLQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLIGMRASSDFVRHGEKKAVIEGIFDIDESKDAIHIL
KNMDIDVDEDFLLVKREIFSSGKSLCKINNQTVTLQDLRKVMQELLDIHGQHETQSLLKQKYHLTLLDNYAESRYQDLLD
KYHQTFQNYKAKKQELEDLESADQALLQRLDLMKFQLEELSEAHLKEGEIEQLEIDIKRIQNSEKLSLALNNAHMTLTDE
NAITDRLYELSNHLLTINDIVPNKYDKLKEDIDQFYYILEDAKHELYDEMANTEFDEQVLNEYESRMNLLNNLKRKYGKD
ISELIAYQEKLNNEINKIENYEQSTSQLREEINALYNQVIEVGQALSKQRRIVARELRDHIVSEIQNLQMKDANLEISFK
KLEEPNIDGIEFVEFLISPNKGEPLKSLNKIASGGELSRIMLALKSIFVKSRGQTAILFDEVDSGVSGQAAQKMAEKMRD
IAEYIQVICISHLPQVASMSDHHLLISKSSKDDRTTTQVQELIGDDKVDEIARMISGASVTDLTRENAREMIQHNQRRR

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=620071 NW955_RS07450 WP_000942210.1 1557991..1559670(-) (recN) [Staphylococcus aureus strain 29-P-01]
ATGTTACAAACCTTATCAATCAAGCAATTTGCTATTATTGAAGAGTTAGAAATTCAATTTTCTGATGGTTTAACTGTTTT
AAGTGGTGAAACGGGTTCAGGTAAGTCAATTATTATAGATGCAATTGGACAATTAATTGGAATGAGAGCTTCATCTGATT
TTGTAAGACATGGTGAAAAAAAGGCTGTCATCGAAGGTATATTTGATATTGACGAGAGTAAAGATGCTATACATATATTG
AAAAATATGGACATTGATGTAGATGAAGATTTCTTATTAGTTAAACGGGAAATTTTTAGCTCTGGTAAAAGTCTTTGTAA
AATTAATAATCAAACAGTTACTTTACAAGATTTACGAAAAGTTATGCAAGAATTATTAGATATTCATGGCCAACATGAAA
CGCAGTCTTTGTTGAAACAAAAATACCATTTAACATTATTGGATAATTACGCAGAATCACGTTATCAAGATTTGTTGGAT
AAATATCATCAAACTTTTCAAAATTATAAAGCCAAAAAGCAAGAGTTAGAAGATTTAGAATCAGCAGACCAAGCGTTGCT
ACAGCGTTTAGATTTAATGAAATTCCAATTAGAAGAATTGTCTGAAGCACATCTAAAAGAAGGCGAAATAGAGCAACTTG
AAATAGATATTAAACGCATTCAAAACTCTGAAAAATTAAGCTTAGCGCTTAATAACGCACATATGACATTAACGGATGAA
AATGCTATCACTGATCGTTTGTATGAACTAAGCAATCATTTGTTAACAATAAACGATATAGTTCCAAACAAATATGACAA
ATTAAAAGAAGATATTGATCAATTTTATTACATTTTAGAAGATGCAAAACATGAGTTATATGATGAAATGGCTAATACAG
AATTCGACGAACAAGTGTTAAACGAGTATGAATCTCGTATGAATTTGCTGAATAATTTAAAACGTAAATATGGAAAAGAT
ATTTCAGAATTAATCGCATATCAAGAAAAGCTTAATAATGAAATCAATAAAATTGAAAACTATGAACAAAGTACATCGCA
GTTACGAGAAGAAATAAATGCATTGTATAATCAAGTTATAGAGGTTGGACAAGCGTTATCAAAGCAGCGTCGTATAGTCG
CTAGGGAGTTAAGAGACCACATTGTATCGGAAATTCAAAACTTACAAATGAAAGACGCAAATCTTGAGATTTCATTTAAA
AAATTAGAAGAACCGAATATTGATGGAATCGAATTTGTAGAATTTTTAATCAGTCCAAATAAAGGGGAACCATTAAAAAG
TTTAAATAAAATTGCATCAGGTGGAGAACTTTCTAGAATTATGTTAGCGTTAAAAAGTATTTTTGTTAAATCGAGAGGTC
AAACTGCAATTTTATTCGATGAGGTTGACTCAGGTGTATCTGGACAAGCCGCACAAAAAATGGCAGAGAAAATGCGAGAT
ATAGCAGAATATATACAAGTTATTTGTATTTCTCACTTGCCACAAGTTGCATCGATGAGCGACCATCATTTATTAATTTC
GAAGTCATCAAAAGATGATCGTACAACAACACAAGTTCAAGAGTTAATTGGCGATGATAAAGTAGATGAAATTGCACGAA
TGATTTCAGGTGCAAGTGTTACTGATTTAACTCGAGAAAATGCAAGAGAAATGATACAACACAATCAAAGACGTAGATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.234

100

0.44