Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NW955_RS03555 Genome accession   NZ_CP102966
Coordinates   754983..756065 (+) Length   360 a.a.
NCBI ID   WP_258416631.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 29-P-01     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 749983..761065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW955_RS03535 (NW955_03535) - 750352..751422 (-) 1071 WP_258412860.1 GGDEF domain-containing protein -
  NW955_RS03540 (NW955_03540) - 751740..752795 (+) 1056 WP_000258151.1 MraY family glycosyltransferase -
  NW955_RS03545 (NW955_03545) - 752968..753609 (-) 642 WP_000192949.1 YigZ family protein -
  NW955_RS03550 (NW955_03550) fakB1 753753..754619 (+) 867 WP_000686348.1 fatty acid kinase binding subunit FakB1 -
  NW955_RS03555 (NW955_03555) comFA 754983..756065 (+) 1083 WP_258416631.1 DEAD/DEAH box helicase Machinery gene
  NW955_RS03560 (NW955_03560) - 756058..756732 (+) 675 WP_258412861.1 ComF family protein -
  NW955_RS03565 (NW955_03565) raiA 756793..757365 (+) 573 WP_258412862.1 ribosome-associated translation inhibitor RaiA -
  NW955_RS03570 (NW955_03570) secA 757779..760310 (+) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  NW955_RS03575 (NW955_03575) - 760352..760450 (+) 99 WP_001791369.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42016.52 Da        Isoelectric Point: 9.5897

>NTDB_id=620037 NW955_RS03555 WP_258416631.1 754983..756065(+) (comFA) [Staphylococcus aureus strain 29-P-01]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRKRQTILLYAVTGAGKTEMMFQGIQYARIQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSRQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKNLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYCYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=620037 NW955_RS03555 WP_258416631.1 754983..756065(+) (comFA) [Staphylococcus aureus strain 29-P-01]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAATACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGACAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAATCTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACAATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATTGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGATATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

39.233

94.167

0.369