Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NW941_RS07695 Genome accession   NZ_CP102963
Coordinates   1594901..1596580 (-) Length   559 a.a.
NCBI ID   WP_000942211.1    Uniprot ID   A0A0H2XGI0
Organism   Staphylococcus aureus strain 40-B-50     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1589901..1601580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW941_RS07675 (NW941_07705) - 1590051..1591325 (-) 1275 WP_000406843.1 dihydrolipoamide acetyltransferase family protein -
  NW941_RS07680 (NW941_07710) - 1591338..1592321 (-) 984 WP_258415036.1 alpha-ketoacid dehydrogenase subunit beta -
  NW941_RS07685 (NW941_07715) - 1592321..1593313 (-) 993 WP_238614787.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  NW941_RS07690 (NW941_07720) lpdA 1593329..1594750 (-) 1422 WP_258412554.1 dihydrolipoyl dehydrogenase -
  NW941_RS07695 (NW941_07725) recN 1594901..1596580 (-) 1680 WP_000942211.1 DNA repair protein RecN Machinery gene
  NW941_RS07700 (NW941_07730) argR 1596596..1597048 (-) 453 WP_001124985.1 transcriptional regulator ArgR -
  NW941_RS07705 (NW941_07735) - 1597479..1598360 (-) 882 WP_258410040.1 polyprenyl synthetase family protein -
  NW941_RS07710 (NW941_07740) - 1598338..1598568 (-) 231 WP_000159865.1 exodeoxyribonuclease VII small subunit -
  NW941_RS07715 (NW941_07745) xseA 1598561..1599898 (-) 1338 WP_258415037.1 exodeoxyribonuclease VII large subunit -
  NW941_RS07720 (NW941_07750) nusB 1599915..1600304 (-) 390 WP_000087385.1 transcription antitermination factor NusB -
  NW941_RS07725 (NW941_07755) - 1600364..1600726 (-) 363 WP_000241588.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 64295.87 Da        Isoelectric Point: 4.7316

>NTDB_id=619981 NW941_RS07695 WP_000942211.1 1594901..1596580(-) (recN) [Staphylococcus aureus strain 40-B-50]
MLQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLIGMRASSDFVRHGEKKAVIEGIFDIDESKDAIHIL
KNMDIDVDEDFLLVKREIFSSGKSLCKINNQTVTLQDLRKVMQELLDIHGQHETQSLLKQKYHLTLLDNYAESRYQDLLD
KYHQTFQNYKAKKQELEDLESADQALLQRLDLMKFQLEELSEAHLKEGEIEQLEIDIKRIQNSEKLSLALNNAHMTLTDE
NAITDRLYELSNHLLTINDIVPNKYDKLKEDIDQFYYILEDAKHELYDEMANTEFDEQVLNEYESRMNLLNNLKRKYGKD
ISELIAYQEKLNNEINKIENYEQSTSQLREEINALYNQVIEVGQALSKQRRIVARELRDHIVSEIQNLQMKDANLEISFK
KLEEPNIDGIEFVEFLISPNKGEPLKSLNKIASGGELSRIMLALKSIFVKSRGQTAILFDEVDSGVSGQAAQKMAEKMRD
IAEYIQVICISHLPQVASMSDHHLLISKSSKDDRTTTQVQELISDDKVDEIARMISGASVTDLTRENAREMIQHNQRRR

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=619981 NW941_RS07695 WP_000942211.1 1594901..1596580(-) (recN) [Staphylococcus aureus strain 40-B-50]
ATGTTACAAACCTTATCAATCAAGCAATTTGCTATTATTGAAGAGTTAGAAATTCAATTTTCTGATGGTTTAACTGTTTT
AAGTGGTGAAACGGGTTCAGGTAAGTCAATTATTATAGATGCAATTGGACAATTAATTGGAATGAGAGCTTCATCTGATT
TTGTAAGACATGGTGAAAAAAAGGCTGTCATCGAAGGTATATTTGATATTGACGAGAGTAAAGATGCTATACATATATTG
AAAAATATGGACATTGATGTAGATGAAGATTTCTTATTAGTTAAACGGGAAATTTTTAGCTCTGGTAAAAGTCTTTGTAA
AATTAATAATCAAACAGTTACTTTACAAGATTTACGAAAAGTTATGCAAGAATTATTAGATATTCATGGCCAACATGAAA
CGCAGTCTTTGTTGAAACAAAAATACCATTTAACATTATTGGATAATTACGCAGAATCACGTTATCAAGATTTGTTGGAT
AAATATCACCAAACTTTTCAAAATTATAAAGCCAAAAAGCAAGAGTTAGAAGATTTAGAATCAGCAGACCAAGCATTGCT
ACAGCGTTTAGATTTAATGAAATTCCAATTAGAAGAATTGTCTGAAGCACATCTAAAAGAAGGCGAAATAGAGCAACTTG
AAATAGATATTAAACGCATTCAAAACTCTGAAAAATTAAGCTTAGCGCTTAATAACGCACATATGACATTAACGGATGAA
AATGCTATCACTGATCGTTTGTATGAACTAAGCAATCATTTGTTAACAATAAACGATATAGTTCCAAACAAATATGACAA
ATTAAAAGAAGATATTGATCAATTTTATTACATTTTAGAAGATGCAAAACATGAGTTATATGATGAAATGGCTAATACAG
AATTCGACGAACAAGTGTTAAACGAGTATGAATCTCGTATGAATTTGCTTAATAATTTAAAACGCAAATATGGAAAAGAT
ATTTCAGAATTAATCGCATATCAAGAAAAACTTAATAATGAAATCAATAAAATTGAAAACTATGAACAAAGTACATCGCA
GTTACGAGAAGAAATAAATGCATTGTATAATCAAGTTATAGAGGTTGGACAAGCGTTATCAAAGCAGCGTCGTATAGTCG
CTAGGGAGTTAAGAGACCACATTGTATCGGAAATTCAAAACTTACAAATGAAAGATGCAAATCTTGAGATTTCATTTAAA
AAATTAGAAGAACCGAATATTGATGGAATCGAATTTGTAGAATTTTTAATCAGTCCTAATAAAGGGGAACCATTAAAAAG
TTTAAATAAAATTGCGTCAGGTGGAGAACTTTCTAGAATTATGTTAGCGTTAAAAAGTATTTTTGTTAAATCGAGAGGTC
AAACTGCAATTTTATTCGATGAGGTTGACTCAGGTGTATCTGGACAAGCCGCACAAAAAATGGCAGAGAAAATGCGAGAT
ATAGCAGAATATATACAAGTTATTTGTATTTCTCACTTGCCACAAGTTGCATCGATGAGCGACCATCATTTATTAATTTC
GAAATCATCAAAAGATGATCGTACAACAACACAAGTTCAAGAGTTAATTAGCGATGATAAAGTAGATGAAATTGCACGAA
TGATTTCAGGTGCAAGTGTTACTGATTTAACTCGAGAAAATGCAAGAGAAATGATACAACACAATCAAAGACGTAGATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2XGI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.234

100

0.44