Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   G157_RS02120 Genome accession   NC_022347
Coordinates   434186..434701 (+) Length   171 a.a.
NCBI ID   WP_002838045.1    Uniprot ID   -
Organism   Campylobacter coli CVM N29710     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 429186..439701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G157_RS02095 (G157_02085) - 429642..429980 (+) 339 WP_002806264.1 hypothetical protein -
  G157_RS02100 (G157_02090) - 429989..430714 (+) 726 WP_002822456.1 phosphatidate cytidylyltransferase -
  G157_RS02105 (G157_02095) dxr 430711..431787 (+) 1077 WP_002777756.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  G157_RS02110 (G157_02100) - 431784..433178 (+) 1395 WP_002822458.1 M99 family carboxypeptidase catalytic domain-containing protein -
  G157_RS02115 (G157_02105) tsaD 433175..434182 (+) 1008 WP_002777752.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  G157_RS02120 (G157_02110) ctsG 434186..434701 (+) 516 WP_002838045.1 type II secretion system protein Machinery gene
  G157_RS02125 (G157_02115) - 434701..435942 (+) 1242 WP_002838043.1 DUF2920 family protein -
  G157_RS02130 (G157_02120) - 435952..437802 (+) 1851 WP_002838041.1 motility associated factor glycosyltransferase family protein -
  G157_RS02135 (G157_02125) - 437897..439618 (+) 1722 WP_021033669.1 flagellin A -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18693.49 Da        Isoelectric Point: 5.7789

>NTDB_id=61998 G157_RS02120 WP_002838045.1 434186..434701(+) (ctsG) [Campylobacter coli CVM N29710]
MKRAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFIDRADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=61998 G157_RS02120 WP_002838045.1 434186..434701(+) (ctsG) [Campylobacter coli CVM N29710]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTGAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTCAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAGATAGAGCGGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGCAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.398

100

0.924

Multiple sequence alignment