Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   K7G91_RS04820 Genome accession   NZ_CP085791
Coordinates   1013854..1016271 (-) Length   805 a.a.
NCBI ID   WP_227798384.1    Uniprot ID   -
Organism   Pasteurella canis strain HL_D1250     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1008854..1021271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7G91_RS04800 (K7G91_000959) kdsB 1010080..1010859 (-) 780 WP_191134675.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K7G91_RS04805 (K7G91_000960) - 1010861..1011043 (-) 183 WP_160531000.1 Trm112 family protein -
  K7G91_RS04810 (K7G91_000961) lpxK 1011070..1012035 (-) 966 WP_227798382.1 tetraacyldisaccharide 4'-kinase -
  K7G91_RS04815 (K7G91_000962) msbA 1012063..1013811 (-) 1749 WP_227798383.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  K7G91_RS04820 (K7G91_000963) rec2 1013854..1016271 (-) 2418 WP_227798384.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K7G91_RS04825 (K7G91_000964) dksA 1016567..1017004 (+) 438 WP_101775963.1 RNA polymerase-binding protein DksA -
  K7G91_RS04830 (K7G91_000965) pcnB 1017093..1018595 (+) 1503 WP_115322552.1 polynucleotide adenylyltransferase PcnB -
  K7G91_RS04835 (K7G91_000966) folK 1018616..1019101 (+) 486 WP_049213980.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  K7G91_RS04840 (K7G91_000967) - 1019151..1020236 (-) 1086 WP_049213979.1 homoserine O-acetyltransferase -
  K7G91_RS04845 (K7G91_000968) - 1020386..1021099 (+) 714 WP_227798385.1 vancomycin high temperature exclusion protein -

Sequence

Protein


Download         Length: 805 a.a.        Molecular weight: 92555.01 Da        Isoelectric Point: 9.9053

>NTDB_id=619967 K7G91_RS04820 WP_227798384.1 1013854..1016271(-) (rec2) [Pasteurella canis strain HL_D1250]
MRLSIEQMSACILFSAVSLLWLPDFLLLTWQMTVVACLILIILFFVCYVSGKRQYTRFLILILCLLFSLGYMHAPAHQLL
FQADKVILLPKKVKIDFKIIEILHQTDYQTFIVSAQLQKGEVEQRIYLQWRTKEKVQLGDVWHGELSLRPISSRLNFSGF
DKQQWYLANRITARASVKSAVKLTQHFSWRNQLLKESLKQTEVLDYQGLLIALAFGERAWLPQQIWQIYQKTNTAHLIAI
SGLHIGLAMSIGYWIVRCVQILLPLRWIIPHLPMLSGLLLAYIYGQLAGFTIPTSRACIALFVIISCRLLRVSYNAWQLL
LIVTAILLLFDPLMILSLSFWLSISALTCLVLWYQVFPFSLLQWQGKSISISPWHKVEWIIRIFHLQIGLLWLFTPIQLL
LFNGFSLSSFYANLIALPIYSLVLVPLVLFATFTQGMFSSWSIANEIAQKVTLILQTWQDNWHFVSQTETAFIITVLTVL
FIIAVRFVYDVKKVDKTRRNLYCLNKPYFGFHFTAEPTLFCSLKRSIYCIATLIVTSCLGYPIYQSFFASQWRLDMLDVG
QGLAVLITKNGRGILYDTGSAWRSGSMAQLEIVPYLQRQGISLEHVIISHDDNDHAGGTKTILQQYPKTTLTTASRQNYG
KTDRTFCLSGQKWYWQGLNIIVLSPHHIVTRAKNMDSCVLLISDGYNNVLLTGDADVASENQFVSQLDKIDVLQVGHHGS
KTSTGYALLQKTRPKIALISSGRWNQWKFPHKQVIQRLTQYQCQIYNTAETGQISLLFNKKQITIQRARTEFSPWYRRLI
GLQKK

Nucleotide


Download         Length: 2418 bp        

>NTDB_id=619967 K7G91_RS04820 WP_227798384.1 1013854..1016271(-) (rec2) [Pasteurella canis strain HL_D1250]
ATGCGATTATCTATTGAACAAATGTCAGCTTGTATTTTATTCAGCGCAGTTTCATTACTTTGGTTACCTGATTTTTTATT
GCTCACTTGGCAGATGACAGTAGTCGCTTGTCTGATATTAATTATATTATTCTTTGTTTGTTATGTTAGTGGAAAAAGAC
AATATACAAGATTTCTCATTTTGATACTTTGTCTTCTATTTAGTCTAGGTTACATGCATGCTCCAGCCCATCAGTTATTA
TTTCAAGCTGATAAAGTCATTTTATTACCCAAAAAAGTAAAAATAGATTTTAAAATTATAGAGATACTTCATCAAACTGA
TTATCAAACCTTTATTGTGTCAGCGCAGTTACAAAAAGGAGAGGTCGAACAACGTATTTATCTGCAATGGCGCACGAAAG
AAAAAGTTCAGTTGGGCGACGTATGGCATGGAGAATTGTCCTTGAGACCTATTTCTTCACGGTTAAATTTTTCAGGTTTT
GATAAACAGCAATGGTATTTAGCCAACCGAATTACTGCACGAGCATCAGTAAAAAGTGCGGTTAAACTTACCCAACATTT
TTCATGGCGTAATCAATTACTTAAAGAGAGTTTAAAACAAACAGAAGTATTAGATTATCAAGGGCTTTTAATAGCGTTAG
CTTTTGGTGAGAGAGCATGGTTACCACAACAAATATGGCAAATTTATCAAAAAACGAATACAGCACATCTTATAGCTATT
TCTGGACTACATATTGGATTAGCAATGAGTATAGGTTATTGGATAGTACGATGTGTTCAAATTTTATTACCATTACGCTG
GATTATCCCTCATTTACCGATGTTAAGCGGTTTACTATTAGCATATATTTATGGACAGCTAGCGGGGTTTACAATACCAA
CCTCTCGTGCTTGTATAGCACTATTTGTGATTATAAGTTGTCGACTACTACGTGTTTCTTACAACGCTTGGCAACTTTTA
TTGATCGTCACGGCTATATTGCTATTGTTCGATCCATTAATGATTTTATCGTTGAGTTTTTGGCTATCAATAAGTGCGCT
AACGTGTTTAGTCCTCTGGTATCAGGTTTTTCCTTTTTCTTTATTACAATGGCAAGGAAAATCCATATCTATCAGCCCTT
GGCATAAAGTAGAGTGGATTATTCGTATTTTTCACCTACAAATTGGCTTACTATGGCTTTTTACACCGATCCAATTACTT
TTGTTTAATGGTTTTTCTTTAAGTAGCTTTTATGCGAATTTAATAGCGTTACCCATTTATAGTCTCGTATTAGTGCCTCT
TGTATTGTTTGCAACTTTTACACAAGGTATGTTCTCATCATGGTCTATCGCAAATGAGATAGCCCAAAAAGTGACGTTAA
TTTTGCAAACTTGGCAAGATAATTGGCATTTTGTTTCTCAAACAGAAACCGCATTCATTATTACTGTACTGACAGTACTT
TTTATCATAGCAGTTCGTTTTGTATACGATGTCAAAAAAGTAGATAAAACAAGGAGAAATCTATATTGTCTCAATAAACC
TTATTTTGGCTTCCATTTTACAGCTGAACCAACATTATTTTGTTCTTTAAAACGCTCAATTTATTGCATTGCAACTTTAA
TTGTGACTAGTTGTTTGGGTTATCCGATTTATCAATCTTTTTTTGCATCTCAATGGCGTTTGGATATGTTAGATGTGGGG
CAAGGATTAGCTGTCTTAATAACAAAAAATGGGCGAGGTATCTTATATGATACAGGAAGCGCATGGCGTAGTGGTAGTAT
GGCGCAGCTTGAGATTGTGCCATATTTACAACGACAAGGTATAAGTCTAGAACACGTAATTATTAGCCATGATGACAATG
ATCATGCAGGAGGAACAAAAACAATCTTACAACAATATCCAAAGACCACACTGACGACGGCATCAAGGCAAAATTATGGC
AAAACAGACCGCACTTTTTGTCTTTCAGGGCAAAAATGGTATTGGCAAGGATTAAACATCATAGTGCTTTCACCTCATCA
TATTGTAACGCGTGCAAAGAATATGGACTCTTGTGTATTATTGATTTCTGATGGATACAATAACGTATTATTAACGGGGG
ATGCTGATGTTGCAAGTGAAAATCAATTTGTCTCTCAACTAGATAAAATTGATGTCTTACAAGTCGGACATCATGGGAGT
AAAACCTCGACAGGCTATGCGCTATTACAAAAAACGCGGCCTAAAATCGCGCTTATTTCAAGTGGACGTTGGAATCAGTG
GAAGTTTCCTCATAAACAAGTGATACAGCGTTTAACGCAGTATCAATGTCAAATTTACAATACGGCAGAGACAGGACAAA
TCAGTTTATTGTTTAATAAAAAACAAATTACAATTCAAAGAGCAAGAACAGAATTTTCACCTTGGTACCGTAGATTAATT
GGCTTACAAAAAAAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(213-483)

Metallo-beta-lactamase superfamily (Lactamase_B)

(558-741)

Domain of unknown function (DUF4131) (DUF4131)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

50.192

97.019

0.487