Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   NLHDIDDJ_RS16975 Genome accession   NZ_CP085788
Coordinates   3557064..3557948 (-) Length   294 a.a.
NCBI ID   WP_228413413.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain RCH52     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3552064..3562948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLHDIDDJ_RS16960 (NLHDIDDJ_03369) miaB 3553911..3555362 (+) 1452 WP_049081790.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  NLHDIDDJ_RS16965 (NLHDIDDJ_03370) - 3555400..3556488 (+) 1089 WP_000122983.1 PhoH family protein -
  NLHDIDDJ_RS16970 (NLHDIDDJ_03371) ybeY 3556498..3556974 (+) 477 WP_000703571.1 rRNA maturation RNase YbeY -
  NLHDIDDJ_RS16975 (NLHDIDDJ_03372) tonB2 3557064..3557948 (-) 885 WP_228413413.1 energy transducer TonB Machinery gene
  NLHDIDDJ_RS16980 (NLHDIDDJ_03373) - 3558179..3558850 (+) 672 WP_001193961.1 hypothetical protein -
  NLHDIDDJ_RS16985 (NLHDIDDJ_03374) - 3559007..3559720 (+) 714 WP_000201548.1 DUF3108 domain-containing protein -
  NLHDIDDJ_RS16990 (NLHDIDDJ_03375) - 3559793..3560368 (+) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  NLHDIDDJ_RS16995 (NLHDIDDJ_03376) wrbA 3560421..3561014 (-) 594 WP_001183347.1 NAD(P)H:quinone oxidoreductase -
  NLHDIDDJ_RS17000 (NLHDIDDJ_03377) - 3561302..3562549 (+) 1248 WP_000893466.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33583.40 Da        Isoelectric Point: 8.3627

>NTDB_id=619950 NLHDIDDJ_RS16975 WP_228413413.1 3557064..3557948(-) (tonB2) [Acinetobacter baumannii strain RCH52]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIRPTEDVIKHADFLAQADQQGSGA
FREAHRMSSNSPAPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSSHPVLDEAAKASVRSGAPFGRFDANMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=619950 NLHDIDDJ_RS16975 WP_228413413.1 3557064..3557948(-) (tonB2) [Acinetobacter baumannii strain RCH52]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCGTCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTACTGAAGATGTGATCAAGCATGCAGACTTTTTAGCCCAAGCTGATCAACAAGGTTCAGGGGCT
TTTCGGGAAGCTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAGATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCGGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAAGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGAGTGGAGCGCCGTTTGGCCGTTTTGA
TGCAAATATGAAAGATATTTCGGAGCTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

99.32

100

0.993