Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   NLHDIDDJ_RS16125 Genome accession   NZ_CP085788
Coordinates   3375537..3380057 (-) Length   1506 a.a.
NCBI ID   WP_228413368.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain RCH52     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 3370537..3385057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLHDIDDJ_RS16095 (NLHDIDDJ_03196) elsL 3371501..3372004 (-) 504 WP_000077301.1 cell wall-recycling L,D-carboxypeptidase ElsL -
  NLHDIDDJ_RS16100 (NLHDIDDJ_03197) - 3372155..3372523 (-) 369 WP_001259501.1 YbaN family protein -
  NLHDIDDJ_RS16105 (NLHDIDDJ_03198) - 3372628..3373536 (+) 909 WP_001017520.1 DUF1853 family protein -
  NLHDIDDJ_RS16110 (NLHDIDDJ_03199) - 3373635..3373778 (+) 144 WP_001984826.1 entericidin A/B family lipoprotein -
  NLHDIDDJ_RS16115 (NLHDIDDJ_03200) dapE 3373904..3375037 (+) 1134 WP_228413366.1 succinyl-diaminopimelate desuccinylase -
  NLHDIDDJ_RS16120 (NLHDIDDJ_03201) - 3375076..3375540 (-) 465 WP_228413367.1 hypothetical protein -
  NLHDIDDJ_RS16125 (NLHDIDDJ_03202) chpA 3375537..3380057 (-) 4521 WP_228413368.1 Hpt domain-containing protein Regulator
  NLHDIDDJ_RS16130 (NLHDIDDJ_03203) - 3380204..3382282 (-) 2079 WP_228413369.1 methyl-accepting chemotaxis protein -
  NLHDIDDJ_RS16135 (NLHDIDDJ_03204) - 3382329..3382865 (-) 537 WP_000729757.1 chemotaxis protein CheW -
  NLHDIDDJ_RS16140 (NLHDIDDJ_03205) - 3382926..3383288 (-) 363 WP_000101096.1 PleD family two-component system response regulator -
  NLHDIDDJ_RS16145 (NLHDIDDJ_03206) pilG 3383312..3383695 (-) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  NLHDIDDJ_RS16150 (NLHDIDDJ_03207) - 3383978..3384616 (+) 639 WP_002027721.1 hypothetical protein -

Sequence


Protein


Download         Length: 1506 a.a.        Molecular weight: 171697.90 Da        Isoelectric Point: 4.3210

>NTDB_id=619948 NLHDIDDJ_RS16125 WP_228413368.1 3375537..3380057(-) (chpA) [Acinetobacter baumannii strain RCH52]
MKEILKTLTEAMTLPEDSYSEQDAEFVEIFIEEIEEIFVDLQPLINKWMQSENIATLTEIRRHFHTLKGSGRMIGAKSSA
ELAWTVEDTLNRVINQSLQLTPTIQSYVQLVFKFYFLKLVDNFKQKRAHTLDFRSLILLGQQLQQQQSLEPALEELLQLS
NTLTAETVTGLELDYIEQDSLAEPIIQATHTEIEINLDETLTLFMEEAEEHLATIHQFLDQELHQYDSYNALIRALHTLR
GSSAMAQVETIFEASTKVEHLFKILLQEELSSHSEEILLLQEYREFVRDSLELLSRYSSSEQLEARLQQFNQSWDAYVEQ
HGDRTDPLMPSHGLVSQLLQLDVSELLDAELDFEKGIRNEFPDYLERLSEQADLLLQHTHSQAMLGLHEYTSQLKESYEV
LLDKPALLQSDYIFEIYQKAHQQLIQLFDALAAGQRVGVVKQHQSILEELKLYTQYIPDISNDLPQQDSTSFEPISNIEP
EPEVVATVENFSDSADWAVLGQSVQQDRQYISSTQVNRNFDADLLDIFLEEAEELLEGIDTDLNIWVGEQENFAALNNLM
RYLHTLKGGANMVQATYLGLIAHELESIYERLIQKQLVATSDLIDFIRLVQDDLADRLQIMREQQLDYAAPYTINALKRA
GQNSNFQPLPVVDAFDTESEIFSEREVISEVIIDEIPVELESALAELEAYHDQVFDTAVTELATPVEVITSVTSQENRVA
ANEQDIEAVVEQTFLEEATELLEMAESLLKQWFEQRTNRSILLQLQRAVHSLKGGARMVGLEAVQAIAYQLENAFEQFAL
HHFNSNIYDHLLESAIAWLKDAIFNHNYQHFDGLQQSLENIQFFETTIQIPTKLTRADLFSSEPVMTFIQGDGTEPPPMM
GAWEQTERLDQNNEMIRVSADLIEKMIDLSGENSINRSRIEMDLSQFSHTLVEMELAIQRLADQLRRMEGELETQIIAKH
GIEHSRYTDFDPLEMDQYSSLNQLSKSLAESASDLVDFKNTLSDKIRDTESLLLQQSRIQAEIQEGLMRTRLVPFSRLLP
RLQRIVRQTSTALNRPAELFVNNTEGELDRNILERLVTPLEHMLRNAIDHGLEDRMQRQQANKPETGRIELNIQRQGTDV
VVVFSDDGQGIDVEKVRQKALLAGLIKPEQDLEQQDILQLIFHPGLSTAEQVTQISGRGVGLDVVQSDIKSLGGHVSVES
IYGQGTTFTIRVPTTVAVSDALMVKVADQQFAIPLAQIDRIIRVSPASLEQYFESPQELFEYENKRYPLRYLSEFVGNQP
IPRLNGVMYSLPVLMIKANNGQTVALLVDQLIGSRAQIVVKPIGQQFSSIGAIAGATILGDGQVCLILDGQNIARQIQST
QRHKQLSEAIYRQRESDERRLIMIVDDSVTVRKVTSRLLERQGYDVVTAKDGVDAIEQLENIKPDLMLLDIEMPRMDGFE
VLNLVRHHDMHQYMPIIMITSRTGEKHRERAFSLGVSQYMGKPFQEEELLENIDALLVASESEVKS

Nucleotide


Download         Length: 4521 bp        

>NTDB_id=619948 NLHDIDDJ_RS16125 WP_228413368.1 3375537..3380057(-) (chpA) [Acinetobacter baumannii strain RCH52]
ATGAAAGAAATATTAAAAACTTTAACTGAAGCAATGACGCTACCTGAAGATAGCTATTCTGAACAAGATGCTGAGTTTGT
TGAGATTTTCATTGAAGAAATTGAAGAGATTTTTGTTGATTTGCAACCTTTGATAAATAAATGGATGCAGTCTGAGAATA
TTGCTACGCTCACTGAAATTCGTCGTCATTTCCATACCTTAAAAGGTTCCGGAAGAATGATTGGCGCTAAATCTTCAGCT
GAGCTTGCGTGGACAGTTGAAGATACACTCAACCGGGTAATCAACCAAAGCTTACAATTAACGCCAACTATTCAGAGCTA
TGTGCAGTTAGTATTTAAGTTCTATTTCCTTAAATTAGTAGATAATTTTAAGCAAAAACGAGCACATACCTTAGATTTCA
GATCTCTTATTTTATTAGGCCAACAACTACAACAACAGCAAAGTTTAGAGCCAGCTTTAGAAGAGCTTTTACAACTTTCA
AATACGCTTACGGCCGAAACAGTGACTGGTCTTGAGCTAGATTATATTGAACAAGATTCATTAGCCGAGCCAATCATTCA
AGCTACACATACTGAAATTGAAATAAATCTAGATGAAACTTTGACCTTATTTATGGAAGAGGCGGAAGAACATTTAGCCA
CGATTCATCAATTCTTAGATCAAGAGTTACATCAGTACGACAGTTATAACGCTTTAATCCGCGCTTTACATACTTTGCGT
GGTAGCTCTGCAATGGCACAGGTCGAAACAATTTTCGAGGCCAGTACCAAAGTTGAGCATTTATTTAAAATACTGCTGCA
AGAAGAGTTATCTTCTCACTCTGAAGAAATTTTATTATTACAAGAATATCGTGAGTTTGTTCGAGATAGCTTGGAACTAC
TATCTAGATATAGTTCAAGTGAACAGCTCGAAGCGAGATTGCAGCAATTTAATCAATCTTGGGATGCATATGTTGAGCAG
CATGGTGACCGAACAGATCCGTTAATGCCTTCTCATGGCTTGGTATCGCAATTATTACAATTAGATGTTTCTGAATTATT
GGATGCAGAATTAGATTTTGAGAAGGGAATTCGTAATGAGTTTCCTGATTACCTTGAACGCCTAAGTGAACAGGCTGACT
TATTACTGCAGCATACACATTCTCAAGCAATGCTGGGTTTACATGAATATACCAGCCAACTGAAAGAAAGTTATGAAGTG
CTGCTTGATAAACCTGCGTTATTACAATCAGACTATATATTTGAAATTTATCAAAAAGCGCATCAACAGCTCATTCAATT
ATTTGATGCTTTAGCTGCTGGTCAGCGAGTCGGTGTTGTTAAGCAACATCAAAGTATTTTAGAAGAATTAAAACTTTATA
CGCAATACATTCCAGACATATCAAATGACCTACCTCAGCAGGATTCGACATCTTTTGAACCAATATCTAATATTGAACCA
GAGCCAGAAGTAGTAGCTACTGTAGAGAATTTCTCAGACTCTGCAGACTGGGCGGTATTAGGTCAAAGTGTGCAGCAAGA
TCGACAATATATTTCATCTACACAAGTGAATCGAAATTTTGATGCTGATCTTTTAGATATCTTTCTTGAGGAAGCTGAAG
AATTACTTGAGGGAATTGATACCGATCTTAATATTTGGGTAGGTGAGCAAGAAAACTTTGCAGCTCTGAACAATCTAATG
CGTTATTTGCATACCTTGAAAGGGGGAGCAAATATGGTTCAGGCAACGTATCTTGGTTTGATTGCCCATGAATTAGAAAG
CATCTATGAGCGTTTAATTCAAAAGCAATTAGTGGCAACTTCAGATTTAATTGATTTTATTCGTTTGGTTCAAGATGACT
TGGCTGACCGTTTACAAATCATGCGTGAACAACAACTAGATTATGCAGCCCCTTACACAATTAACGCATTAAAACGAGCG
GGTCAAAACTCTAACTTCCAACCTTTACCAGTGGTTGACGCATTTGATACTGAAAGTGAGATATTCTCTGAGCGAGAGGT
GATATCTGAAGTAATAATAGATGAGATACCAGTAGAACTTGAGTCTGCTCTTGCAGAATTAGAAGCTTATCACGATCAGG
TATTCGATACAGCGGTTACCGAGTTAGCTACTCCAGTTGAAGTGATTACCTCGGTTACATCGCAAGAGAATAGAGTTGCA
GCTAATGAACAGGACATTGAGGCTGTTGTTGAACAGACCTTCCTAGAAGAAGCTACTGAATTGTTAGAAATGGCTGAGTC
GCTATTAAAACAATGGTTTGAACAGCGTACAAACCGTAGTATTTTGCTTCAGCTACAAAGAGCCGTGCACAGTTTGAAAG
GTGGTGCACGAATGGTGGGTTTAGAAGCCGTACAAGCAATTGCCTACCAACTAGAAAATGCTTTTGAACAATTTGCGCTG
CATCACTTCAATTCGAATATTTATGATCATTTATTAGAAAGTGCAATTGCATGGTTAAAAGATGCAATTTTCAACCATAA
CTATCAGCATTTCGATGGATTACAGCAAAGTTTAGAAAATATTCAATTCTTTGAAACTACAATCCAGATTCCGACTAAGT
TAACTAGAGCGGACTTGTTTAGCTCAGAACCAGTGATGACCTTTATACAAGGTGATGGTACAGAGCCTCCACCAATGATG
GGAGCGTGGGAGCAAACAGAGCGTCTGGATCAGAATAATGAAATGATCCGTGTTTCAGCCGACTTAATCGAGAAAATGAT
TGATTTGTCTGGTGAAAACTCCATTAACCGTTCACGAATTGAAATGGACCTAAGCCAATTTAGCCATACACTAGTTGAAA
TGGAGTTGGCGATTCAACGACTTGCCGATCAGTTACGTCGAATGGAAGGTGAGTTAGAAACACAGATTATTGCTAAACAT
GGAATTGAACATTCTCGTTATACCGACTTTGATCCGTTAGAGATGGACCAATATTCATCTTTAAATCAATTGTCGAAATC
GCTTGCTGAATCTGCATCGGACTTGGTCGACTTTAAAAATACGTTATCTGACAAAATCAGAGATACCGAAAGTTTGCTTT
TACAACAATCACGAATTCAAGCGGAAATTCAAGAAGGTTTAATGCGGACACGTTTGGTCCCATTTTCGCGTTTATTGCCG
CGTTTACAACGAATTGTTCGTCAGACGTCTACAGCATTGAATAGACCTGCTGAGCTTTTCGTAAATAATACGGAAGGTGA
GTTGGACCGCAATATTTTAGAACGGTTAGTGACTCCGCTTGAGCATATGCTCAGAAACGCAATTGACCATGGTTTAGAAG
ACCGAATGCAGCGGCAACAAGCAAATAAACCGGAAACAGGGCGTATTGAACTTAATATTCAGCGTCAAGGTACGGATGTT
GTGGTTGTCTTTAGTGATGATGGTCAAGGCATTGATGTTGAAAAAGTACGTCAGAAAGCACTCCTTGCCGGATTGATCAA
GCCAGAACAAGACTTAGAACAGCAAGACATACTGCAACTCATTTTCCATCCGGGTTTAAGTACAGCAGAGCAAGTCACTC
AGATTTCCGGACGTGGTGTAGGTCTTGATGTCGTGCAGAGTGATATTAAGTCTTTGGGTGGACATGTCAGCGTTGAATCC
ATCTATGGGCAGGGAACAACATTTACGATTCGCGTACCGACTACAGTAGCGGTAAGTGATGCCTTAATGGTTAAAGTGGC
AGATCAACAATTTGCGATTCCACTCGCTCAAATCGATCGAATTATTCGAGTATCACCAGCCTCTTTAGAGCAGTATTTTG
AAAGTCCTCAAGAACTATTTGAGTATGAAAATAAACGTTATCCATTACGTTATCTTTCAGAATTTGTTGGCAACCAACCC
ATACCACGTCTAAATGGCGTGATGTATTCATTACCTGTGTTAATGATTAAAGCCAATAATGGCCAAACTGTGGCACTACT
TGTTGACCAGTTAATTGGCTCTCGAGCACAAATTGTAGTGAAACCAATTGGTCAACAGTTCTCTAGCATTGGAGCAATTG
CAGGCGCCACAATTTTAGGTGATGGACAGGTCTGCTTAATTTTAGACGGACAAAATATTGCGCGACAAATTCAGTCAACT
CAGCGTCATAAACAACTTAGTGAAGCAATATATAGACAACGAGAGTCTGATGAACGCCGTCTCATCATGATTGTAGATGA
CTCAGTAACTGTGCGCAAGGTCACTTCCCGATTACTTGAACGCCAAGGCTATGATGTGGTTACGGCTAAAGATGGTGTTG
ACGCCATAGAGCAGCTAGAAAATATTAAGCCAGATTTGATGCTACTTGATATTGAAATGCCACGTATGGATGGTTTTGAG
GTTCTCAATCTTGTACGACATCATGATATGCATCAATACATGCCAATTATTATGATTACATCTAGAACAGGCGAAAAACA
TCGTGAACGAGCATTCTCGTTAGGTGTAAGTCAATATATGGGTAAACCTTTCCAGGAAGAAGAGTTACTAGAGAATATCG
ATGCTTTACTTGTAGCGTCTGAAAGTGAGGTCAAATCATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

98.406

100

0.984