Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NW941_RS03535 Genome accession   NZ_CP102963
Coordinates   753712..754794 (+) Length   360 a.a.
NCBI ID   WP_258415196.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 40-B-50     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 748712..759794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW941_RS03515 (NW941_03530) - 749089..750159 (-) 1071 WP_000460983.1 GGDEF domain-containing protein -
  NW941_RS03520 (NW941_03535) - 750477..751532 (+) 1056 WP_000258150.1 MraY family glycosyltransferase -
  NW941_RS03525 (NW941_03540) - 751697..752338 (-) 642 WP_000192949.1 YigZ family protein -
  NW941_RS03530 (NW941_03545) fakB1 752482..753348 (+) 867 WP_000686344.1 fatty acid kinase binding subunit FakB1 -
  NW941_RS03535 (NW941_03550) comFA 753712..754794 (+) 1083 WP_258415196.1 DEAD/DEAH box helicase Machinery gene
  NW941_RS03540 (NW941_03555) - 754787..755461 (+) 675 WP_001057968.1 ComF family protein -
  NW941_RS03545 (NW941_03560) raiA 755522..756094 (+) 573 WP_000617735.1 ribosome-associated translation inhibitor RaiA -
  NW941_RS03550 (NW941_03565) secA 756508..759039 (+) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  NW941_RS03555 (NW941_03570) - 759081..759169 (+) 89 Protein_687 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42007.51 Da        Isoelectric Point: 9.5896

>NTDB_id=619948 NW941_RS03535 WP_258415196.1 753712..754794(+) (comFA) [Staphylococcus aureus strain 40-B-50]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRKRQTILLYAVTGAGKTEMMFQGIQYARIQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSRQQFEGHFVVCTVHQLYRFKQQFDTIFIDEVDAFPLSMDKNLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYCYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=619948 NW941_RS03535 WP_258415196.1 753712..754794(+) (comFA) [Staphylococcus aureus strain 40-B-50]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAATACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGACAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCAATTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAATTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACAATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATTGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTCCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

39.233

94.167

0.369