Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NLHDIDDJ_RS03895 Genome accession   NZ_CP085788
Coordinates   811842..812252 (+) Length   136 a.a.
NCBI ID   WP_001978433.1    Uniprot ID   A0A0E1JQ57
Organism   Acinetobacter baumannii strain RCH52     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 806842..817252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLHDIDDJ_RS03880 (NLHDIDDJ_00764) - 807831..810137 (+) 2307 WP_228413777.1 RelA/SpoT family protein -
  NLHDIDDJ_RS03885 (NLHDIDDJ_00765) - 810182..810955 (-) 774 WP_000682841.1 SDR family oxidoreductase -
  NLHDIDDJ_RS03890 (NLHDIDDJ_00766) mazG 811067..811873 (+) 807 WP_228413779.1 nucleoside triphosphate pyrophosphohydrolase -
  NLHDIDDJ_RS03895 (NLHDIDDJ_00767) comEA 811842..812252 (+) 411 WP_001978433.1 ComEA family DNA-binding protein Machinery gene
  NLHDIDDJ_RS03900 (NLHDIDDJ_00768) pcnB 812377..813840 (+) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  NLHDIDDJ_RS03905 (NLHDIDDJ_00769) folK 813837..814319 (+) 483 WP_000219215.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  NLHDIDDJ_RS03910 (NLHDIDDJ_00770) panB 814365..815174 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  NLHDIDDJ_RS03915 (NLHDIDDJ_00771) panC 815178..816026 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  NLHDIDDJ_RS03920 (NLHDIDDJ_00772) rapZ 816049..816900 (+) 852 WP_000821671.1 RNase adapter RapZ -
  NLHDIDDJ_RS03925 (NLHDIDDJ_00773) - 816897..817166 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15687.00 Da        Isoelectric Point: 10.4475

>NTDB_id=619936 NLHDIDDJ_RS03895 WP_001978433.1 811842..812252(+) (comEA) [Acinetobacter baumannii strain RCH52]
MQYSMRFWKNKYFLLIMLCLGVISPSVYAQSFDKNFQEWKAKQQMYDQKLNISKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=619936 NLHDIDDJ_RS03895 WP_001978433.1 811842..812252(+) (comEA) [Acinetobacter baumannii strain RCH52]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTCTTTTAATAATGTTGTGCTTGGGGGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGACAAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCCATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E1JQ57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.059

100

0.971
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

42.748

96.324

0.412