Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   NLHDIDDJ_RS01490 Genome accession   NZ_CP085788
Coordinates   316827..317153 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain RCH52     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 311827..322153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLHDIDDJ_RS01465 (NLHDIDDJ_00290) hemC 312444..313361 (+) 918 WP_002159654.1 hydroxymethylbilane synthase -
  NLHDIDDJ_RS01470 (NLHDIDDJ_00291) - 313366..314133 (+) 768 WP_000897413.1 uroporphyrinogen-III synthase -
  NLHDIDDJ_RS01475 (NLHDIDDJ_00292) - 314142..314981 (+) 840 WP_078209187.1 hypothetical protein -
  NLHDIDDJ_RS01480 (NLHDIDDJ_00293) - 314991..316184 (+) 1194 WP_228413642.1 heme biosynthesis protein HemY -
  NLHDIDDJ_RS01485 (NLHDIDDJ_00294) - 316192..316632 (+) 441 WP_000661569.1 acyl-CoA thioesterase -
  NLHDIDDJ_RS01490 (NLHDIDDJ_00295) hns 316827..317153 (+) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  NLHDIDDJ_RS01495 (NLHDIDDJ_00296) gspN 317485..318228 (+) 744 WP_000730343.1 type II secretion system protein N -
  NLHDIDDJ_RS01500 (NLHDIDDJ_00297) - 318228..319064 (+) 837 WP_000870031.1 type II secretion system protein N -
  NLHDIDDJ_RS01505 (NLHDIDDJ_00298) gspD 319106..321376 (+) 2271 WP_228413644.1 type II secretion system secretin GspD -
  NLHDIDDJ_RS01510 (NLHDIDDJ_00299) - 321417..322046 (+) 630 WP_106913904.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=619927 NLHDIDDJ_RS01490 WP_000801427.1 316827..317153(+) (hns) [Acinetobacter baumannii strain RCH52]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=619927 NLHDIDDJ_RS01490 WP_000801427.1 316827..317153(+) (hns) [Acinetobacter baumannii strain RCH52]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGCCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1