Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   M892_RS24130 Genome accession   NC_022270
Coordinates   1492268..1493365 (-) Length   365 a.a.
NCBI ID   WP_012129029.1    Uniprot ID   A7N3Z1
Organism   Vibrio campbellii ATCC BAA-1116     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1487268..1498365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M892_RS24115 (M892_24595) - 1487473..1488135 (+) 663 WP_012129031.1 PilZ domain-containing protein -
  M892_RS24120 (M892_24600) - 1488284..1489609 (+) 1326 WP_011999187.1 IS4 family transposase -
  M892_RS24125 (M892_24605) luxQ 1489689..1492268 (-) 2580 WP_012129030.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  M892_RS24130 (M892_24610) luxP 1492268..1493365 (-) 1098 WP_012129029.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  M892_RS24135 (M892_24615) - 1493763..1494077 (-) 315 WP_012129028.1 GIY-YIG nuclease family protein -
  M892_RS24140 (M892_24620) - 1494074..1494727 (-) 654 WP_012129027.1 YceH family protein -
  M892_RS24145 (M892_24625) - 1494821..1495024 (-) 204 WP_005433391.1 hypothetical protein -
  M892_RS24150 (M892_24630) - 1495263..1495577 (+) 315 WP_005373603.1 DUF496 family protein -
  M892_RS24155 (M892_24635) - 1495701..1497038 (+) 1338 WP_012129024.1 MATE family efflux transporter -
  M892_RS24160 (M892_24640) - 1497132..1498121 (-) 990 WP_012129023.1 Gfo/Idh/MocA family oxidoreductase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41457.80 Da        Isoelectric Point: 5.6921

>NTDB_id=61989 M892_RS24130 WP_012129029.1 1492268..1493365(-) (luxP) [Vibrio campbellii ATCC BAA-1116]
MKKALLFSLISMVGFSPASQATQVLNGYWGYQEFLDEFPEQRNLTNALSEAVRAQPVPLSKPTQRPIKISVVYPGQQVSD
YWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEHVLDSTNTKLILQNI
TTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYISDVRGDTFIHQVNRDNNFELQSAYYTKAT
KQSGYDAAKASLAKHPDVDFIYACSTDVALGAVDALAELGREDIMINGWGGGSAELDAIQKGDLDITVMRMNDDTGIAMA
EAIKWDLEDKPVPTVYSGDFEIVTKADSPERIEALKKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=61989 M892_RS24130 WP_012129029.1 1492268..1493365(-) (luxP) [Vibrio campbellii ATCC BAA-1116]
ATGAAGAAAGCGTTACTATTTTCCCTGATTTCTATGGTCGGTTTTTCTCCAGCGTCTCAAGCAACACAAGTTTTGAATGG
GTACTGGGGTTATCAAGAGTTTTTGGACGAGTTTCCCGAGCAACGAAATCTGACCAATGCTTTATCAGAAGCAGTACGAG
CACAGCCGGTCCCACTGTCTAAACCGACACAACGCCCGATTAAAATATCAGTGGTTTACCCAGGACAGCAAGTTTCAGAT
TACTGGGTAAGAAATATTGCATCATTCGAAAAACGTTTGTATAAGTTGAATATTAACTACCAACTGAACCAAGTGTTTAC
TCGTCCAAATGCTGATATCAAGCAACAAAGCTTGTCATTAATGGAAGCGCTCAAGAGCAAATCGGATTACTTGATTTTCA
CGCTTGATACGACAAGACACCGTAAATTTGTTGAGCACGTTTTGGACTCAACGAACACCAAATTGATCTTGCAAAATATC
ACTACACCAGTCCGTGAGTGGGACAAACATCAACCGTTTTTATATGTCGGATTTGACCACGCAGAAGGCAGTCGTGAATT
AGCAACAGAATTCGGAAAGTTCTTCCCAAAACACACATATTACAGTGTGCTCTACTTTTCTGAAGGTTATATTAGCGATG
TGAGAGGTGATACTTTTATTCACCAAGTAAACCGTGATAATAACTTTGAGCTACAATCAGCGTATTACACGAAGGCAACC
AAGCAATCCGGCTATGATGCTGCGAAAGCGAGTTTAGCAAAACATCCAGATGTTGATTTTATCTATGCATGTTCGACCGA
CGTAGCATTAGGTGCAGTAGACGCACTGGCTGAGTTGGGACGTGAAGATATTATGATCAATGGCTGGGGTGGAGGCTCTG
CTGAGTTAGACGCTATCCAGAAGGGTGATTTAGACATCACCGTCATGCGTATGAATGATGACACTGGCATAGCCATGGCA
GAAGCGATTAAGTGGGACTTGGAAGATAAACCAGTTCCGACCGTATACTCAGGTGACTTTGAAATCGTAACAAAGGCAGA
TTCACCGGAGAGAATCGAAGCGCTGAAAAAGCGCGCATTTAGATATTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7N3Z1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

62.912

99.726

0.627

Multiple sequence alignment