Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LJU36_RS10505 Genome accession   NZ_CP085774
Coordinates   2220549..2221175 (+) Length   208 a.a.
NCBI ID   WP_017384804.1    Uniprot ID   A0AA37AJW2
Organism   Enterobacter hormaechei strain 48947CZ     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2215549..2226175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJU36_RS10485 (LJU36_10485) - 2215948..2217708 (-) 1761 WP_017384808.1 Lon protease family protein -
  LJU36_RS10490 (LJU36_10490) matP 2217895..2218347 (+) 453 WP_006809347.1 macrodomain Ter protein MatP -
  LJU36_RS10495 (LJU36_10495) ompA 2218413..2219465 (-) 1053 WP_017694761.1 porin OmpA -
  LJU36_RS10500 (LJU36_10500) sulA 2219822..2220331 (-) 510 WP_026094322.1 SOS-induced cell division inhibitor SulA -
  LJU36_RS10505 (LJU36_10505) sxy/tfoX 2220549..2221175 (+) 627 WP_017384804.1 TfoX/Sxy family DNA transformation protein Regulator
  LJU36_RS10510 (LJU36_10510) yccS 2221132..2223294 (-) 2163 WP_015570895.1 YccS family putative transporter -
  LJU36_RS10515 (LJU36_10515) - 2223313..2223759 (-) 447 WP_003858149.1 YccF domain-containing protein -
  LJU36_RS10520 (LJU36_10520) helD 2223882..2225936 (+) 2055 WP_227801401.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24018.63 Da        Isoelectric Point: 9.4592

>NTDB_id=619875 LJU36_RS10505 WP_017384804.1 2220549..2221175(+) (sxy/tfoX) [Enterobacter hormaechei strain 48947CZ]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELMEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=619875 LJU36_RS10505 WP_017384804.1 2220549..2221175(+) (sxy/tfoX) [Enterobacter hormaechei strain 48947CZ]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAAGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTGACCCTGATGAAACGAGGACGGCCAGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAGCTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAATCGGCTTAAGGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCCATCGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTATGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572