Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   NW973_RS04490 Genome accession   NZ_CP102961
Coordinates   934586..936394 (+) Length   602 a.a.
NCBI ID   WP_258411057.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 03-RR-88     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 929586..941394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW973_RS04465 (NW973_04465) opp4C 929739..930620 (+) 882 WP_001180264.1 oligopeptide ABC transporter permease -
  NW973_RS04470 (NW973_04470) trpS 930662..931651 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  NW973_RS04475 (NW973_04475) spxA 931946..932341 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  NW973_RS04480 (NW973_04480) mecA 932712..933431 (+) 720 WP_001217728.1 adaptor protein MecA -
  NW973_RS04485 (NW973_04485) coiA 933552..934538 (+) 987 WP_258411056.1 competence protein CoiA family protein Machinery gene
  NW973_RS04490 (NW973_04490) pepF 934586..936394 (+) 1809 WP_258411057.1 oligoendopeptidase F Regulator
  NW973_RS04495 (NW973_04495) yjbH 936854..937660 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  NW973_RS04500 (NW973_04500) - 937683..938048 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  NW973_RS04505 (NW973_04505) - 938152..938745 (-) 594 WP_000224619.1 CYTH domain-containing protein -
  NW973_RS04510 (NW973_04510) - 938931..939278 (+) 348 WP_001242102.1 hypothetical protein -
  NW973_RS04515 (NW973_04515) - 939295..939930 (+) 636 WP_001077683.1 GTP pyrophosphokinase family protein -
  NW973_RS04520 (NW973_04520) - 939947..940756 (+) 810 WP_001270834.1 NAD kinase -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 69792.37 Da        Isoelectric Point: 4.9226

>NTDB_id=619783 NW973_RS04490 WP_258411057.1 934586..936394(+) (pepF) [Staphylococcus aureus strain 03-RR-88]
MSQQLTREEQERKYPEYTWDLTTIFKDDEAFEAAFKEVESELGKEEQFKGHIGDSAETLYNALELEDTLGTKLEKVYVYA
HLKQDQDTTNDKYTGMESRAHQLIIKFSSAWSFLVPEILQIDEDKIQSFVNSYDKLQKFAFDLKLINEKRPHILDAETEK
LLTEAQDALSTPSNVYGMFSNADLVFEDAIDKDGNAHPLTQGTFIKYLESDDRKLRESAFRNVYKAYGAHNNTLGATLAG
EVKKNVFNARTHNYKTAREKALSNNHIPENVYDNLVKTVHKYLPLLHRYTELRKELLGLDDLKMYDLYTPLIKDIKFEMP
YEEAKEWMLKALEPMGEEYLNVVKEGLNNRWVDVYENKGKRSGGYSSGAHLTNPFILLNWSNTISDLYTLVHEFGHSAHS
YFSRKFQPSNSSDYTIFVAEVASTCNEALLSDYMDKHLDDEKRLLLLNQELERFRATLFRQTMFAEFEHKIHAIEEAGEP
LTPTRMNEEYAKLNKLYFGDSVETDEDISKEWSRIPHFYMNYYVYQYATGYSAAQSLSHQILTEGKPAVDRYINEFLKKG
SSNYPIEILKNAGVDMTTPEPIEQACEVFEQKLNAFEKLMKA

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=619783 NW973_RS04490 WP_258411057.1 934586..936394(+) (pepF) [Staphylococcus aureus strain 03-RR-88]
ATGAGTCAACAATTAACGAGAGAAGAACAGGAACGTAAATATCCTGAGTATACATGGGACCTAACTACAATCTTTAAAGA
TGACGAAGCATTTGAAGCTGCATTTAAAGAAGTTGAAAGTGAGTTAGGTAAAGAAGAACAATTTAAAGGACATATTGGTG
ATAGCGCTGAAACACTTTATAATGCATTGGAATTAGAAGATACATTAGGTACTAAATTAGAAAAAGTTTATGTGTACGCA
CATTTAAAACAAGACCAAGATACTACTAATGATAAATATACAGGTATGGAATCGAGAGCACACCAACTTATTATAAAATT
TAGTTCTGCATGGAGTTTCTTAGTACCAGAAATTTTACAAATTGATGAAGATAAAATTCAATCATTTGTAAATTCATATG
ATAAATTACAAAAATTCGCATTTGATTTGAAGTTGATTAATGAAAAACGTCCGCATATTTTAGATGCTGAAACTGAAAAA
TTACTAACAGAAGCACAAGACGCATTATCAACGCCATCAAATGTATACGGTATGTTTAGCAACGCTGATTTAGTATTTGA
AGATGCGATTGATAAAGATGGAAATGCACACCCGTTAACACAAGGTACATTTATTAAGTATTTAGAATCAGATGATCGCA
AACTAAGAGAAAGTGCTTTTAGAAATGTATATAAAGCATATGGTGCTCATAATAATACGCTTGGCGCTACGCTAGCAGGT
GAAGTGAAGAAAAATGTATTTAATGCTCGTACACACAATTACAAAACTGCAAGAGAAAAAGCATTGAGTAATAATCATAT
TCCAGAAAATGTATATGACAATCTAGTAAAAACTGTACATAAATATTTACCATTGCTACATAGATATACTGAATTGCGCA
AAGAATTGCTAGGTTTAGATGACTTGAAAATGTATGATTTATATACACCATTAATTAAAGATATTAAGTTTGAAATGCCT
TATGAAGAAGCTAAAGAGTGGATGTTAAAAGCATTAGAACCAATGGGTGAAGAATATTTAAATGTAGTTAAAGAAGGCTT
AAACAATCGTTGGGTCGATGTCTATGAGAATAAAGGTAAACGTTCAGGTGGCTATTCATCAGGTGCACATTTAACTAATC
CATTTATTCTACTTAACTGGTCTAATACTATTTCAGACTTATACACATTAGTTCATGAATTTGGGCATTCAGCACATAGT
TACTTCAGTAGAAAATTCCAACCGTCAAATTCTAGTGACTACACTATTTTTGTCGCTGAAGTTGCATCAACTTGTAACGA
AGCACTTTTAAGTGATTATATGGATAAACATCTTGATGATGAAAAACGCTTATTATTATTAAACCAAGAATTAGAACGTT
TCAGAGCTACATTATTCCGACAAACAATGTTCGCAGAATTTGAGCATAAAATTCATGCAATTGAAGAAGCAGGTGAACCA
TTAACGCCAACTAGAATGAATGAAGAATATGCCAAATTAAATAAATTATACTTCGGTGATTCTGTAGAAACTGATGAAGA
TATTAGTAAGGAATGGTCACGTATTCCACACTTCTATATGAATTATTATGTATATCAATACGCAACTGGATACAGTGCAG
CTCAAAGCTTAAGTCATCAAATTTTAACAGAAGGTAAGCCAGCAGTAGATAGATATATTAATGAATTCTTGAAAAAAGGT
AGCTCAAATTATCCAATTGAGATATTAAAAAATGCTGGTGTAGATATGACAACACCTGAACCAATTGAACAAGCTTGTGA
AGTTTTTGAACAAAAATTGAACGCTTTTGAAAAATTAATGAAAGCTTAG

Domains

Predicted by InterProScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

43.952

97.508

0.429