Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LJU46_RS17730 Genome accession   NZ_CP085748
Coordinates   3599761..3600387 (-) Length   208 a.a.
NCBI ID   WP_062934086.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain 59732CZ     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3594761..3605387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJU46_RS17715 (LJU46_17715) helD 3595000..3597054 (-) 2055 WP_045142606.1 DNA helicase IV -
  LJU46_RS17720 (LJU46_17720) - 3597177..3597623 (+) 447 WP_015570894.1 YccF domain-containing protein -
  LJU46_RS17725 (LJU46_17725) yccS 3597642..3599804 (+) 2163 WP_227798773.1 YccS family putative transporter -
  LJU46_RS17730 (LJU46_17730) sxy/tfoX 3599761..3600387 (-) 627 WP_062934086.1 TfoX/Sxy family DNA transformation protein Regulator
  LJU46_RS17735 (LJU46_17735) sulA 3600605..3601114 (+) 510 WP_026094322.1 SOS-induced cell division inhibitor SulA -
  LJU46_RS17740 (LJU46_17740) ompA 3601471..3602523 (+) 1053 WP_017694761.1 porin OmpA -
  LJU46_RS17745 (LJU46_17745) matP 3602589..3603041 (-) 453 WP_006809347.1 macrodomain Ter protein MatP -
  LJU46_RS17750 (LJU46_17750) - 3603228..3604988 (+) 1761 WP_062934085.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23984.61 Da        Isoelectric Point: 9.4592

>NTDB_id=619773 LJU46_RS17730 WP_062934086.1 3599761..3600387(-) (sxy/tfoX) [Enterobacter hormaechei strain 59732CZ]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVIAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELMEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=619773 LJU46_RS17730 WP_062934086.1 3599761..3600387(-) (sxy/tfoX) [Enterobacter hormaechei strain 59732CZ]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAGGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGATCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTGACCCTGATGAAACGAGGACGGCCAGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAGCTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAGGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCCATCGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTATGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.416

97.115

0.567