Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   M892_RS13630 Genome accession   NC_022269
Coordinates   2940707..2941225 (+) Length   172 a.a.
NCBI ID   WP_012128886.1    Uniprot ID   Q9Z5X1
Organism   Vibrio campbellii ATCC BAA-1116     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2935707..2946225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M892_RS13620 (M892_13660) gshA 2938424..2939992 (+) 1569 WP_012128888.1 glutamate--cysteine ligase -
  M892_RS13625 (M892_13665) - 2940054..2940617 (+) 564 WP_012128887.1 hypothetical protein -
  M892_RS13630 (M892_13670) luxS 2940707..2941225 (+) 519 WP_012128886.1 S-ribosylhomocysteine lyase Regulator
  M892_RS13635 (M892_13675) - 2941314..2942588 (-) 1275 WP_005426658.1 CNNM domain-containing protein -
  M892_RS13640 (M892_13680) - 2942744..2943538 (-) 795 WP_005426660.1 inner membrane protein YpjD -
  M892_RS13645 (M892_13685) ffh 2943752..2945134 (+) 1383 WP_005462555.1 signal recognition particle protein -
  M892_RS13650 (M892_13690) rpsP 2945345..2945593 (+) 249 WP_004410028.1 30S ribosomal protein S16 -
  M892_RS13655 (M892_13695) rimM 2945621..2946169 (+) 549 WP_005534055.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19142.91 Da        Isoelectric Point: 4.7297

>NTDB_id=61975 M892_RS13630 WP_012128886.1 2940707..2941225(+) (luxS) [Vibrio campbellii ATCC BAA-1116]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEVGVAVNKNDELA
LPESMLRELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=61975 M892_RS13630 WP_012128886.1 2940707..2941225(+) (luxS) [Vibrio campbellii ATCC BAA-1116]
ATGCCTTTATTAGACAGCTTTACCGTAGACCACACGCGTATGAATGCACCAGCGGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAAGGAGACACCATCACGGTATTCGACCTACGTTTCACTGCTCCAAACAAAGACATCCTTTCTGAGAAAGGAATTC
ATACATTAGAGCATTTGTACGCAGGCTTTATGCGTAATCACCTAAATGGTGATAGCGTTGAGATCATTGATATCTCACCA
ATGGGGTGCCGTACTGGTTTCTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCTGACGCTTGGATTGCCGC
GATGGAAGACGTACTAAAAGTAGAAAACCAAAACAAGATCCCTGAGTTGAACGAATACCAATGTGGTACAGCAGCGATGC
ACTCTCTGGATGAAGCGAAGCAAATCGCGAAGAACATTCTAGAAGTGGGTGTGGCGGTGAATAAGAATGATGAATTGGCA
CTGCCAGAGTCAATGCTGAGAGAGCTACGCATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9Z5X1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.965

99.419

0.855

Multiple sequence alignment