Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LJU47_RS05515 Genome accession   NZ_CP085743
Coordinates   1090939..1091565 (-) Length   208 a.a.
NCBI ID   WP_060580015.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain 60214CZ     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1085939..1096565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJU47_RS05500 (LJU47_05500) helD 1086178..1088232 (-) 2055 WP_060580014.1 DNA helicase IV -
  LJU47_RS05505 (LJU47_05505) - 1088355..1088801 (+) 447 WP_003858149.1 YccF domain-containing protein -
  LJU47_RS05510 (LJU47_05510) yccS 1088820..1090982 (+) 2163 WP_003858151.1 YccS family putative transporter -
  LJU47_RS05515 (LJU47_05515) sxy/tfoX 1090939..1091565 (-) 627 WP_060580015.1 TfoX/Sxy family DNA transformation protein Regulator
  LJU47_RS05520 (LJU47_05520) sulA 1091783..1092292 (+) 510 WP_003858155.1 SOS-induced cell division inhibitor SulA -
  LJU47_RS05525 (LJU47_05525) ompA 1092649..1093701 (+) 1053 WP_003858156.1 porin OmpA -
  LJU47_RS05530 (LJU47_05530) matP 1093767..1094219 (-) 453 WP_003858158.1 macrodomain Ter protein MatP -
  LJU47_RS05535 (LJU47_05535) - 1094406..1096166 (+) 1761 WP_003858160.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23978.59 Da        Isoelectric Point: 9.4590

>NTDB_id=619733 LJU47_RS05515 WP_060580015.1 1090939..1091565(-) (sxy/tfoX) [Enterobacter hormaechei strain 60214CZ]
MKKISYERIYQSQEYLSPLGEILHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELTEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=619733 LJU47_RS05515 WP_060580015.1 1090939..1091565(-) (sxy/tfoX) [Enterobacter hormaechei strain 60214CZ]
ATGAAAAAGATATCTTATGAGCGGATTTATCAATCTCAAGAATACCTCTCTCCGCTGGGCGAAATTCTTCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCTTCCTCTTTTCTGACCCTGATGAAACGAGGACGCCCAGTGCTGCTTAAT
TACTACCGTGTGGACGAAGGTCTGTGGCAAAACAGGGAAAAACTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAAGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCGAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCGATTGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTACGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572