Detailed information NTG0061972

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: M892_RS13480
• Genome accession: NC_022269
• Coordinates: 2911815..2912801 (+)
• Length: 328 a.a.
• NCBI ID: WP_005425361.1
• Uniprot ID: A7MTT4
• Organism: Vibrio campbellii ATCC BAA-1116
• Function: regulation of chitinases (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	2912938..2914260	2911815..2912801	flank	137

Gene organization within MGE regions

Location: 2911815..2914260

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M892_RS13480 (M892_13520)	rpoS	2911815..2912801 (+)	987	WP_005425361.1	RNA polymerase sigma factor RpoS	Regulator
M892_RS13485 (M892_13525)	-	2912938..2914260 (+)	1323	WP_041853460.1	IS4 family transposase	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37482.36 Da
• Isoelectric Point: 4.7331

>NTDB_id=61972 M892_RS13480 WP_005425361.1 2911815..2912801(+) (rpoS) [Vibrio campbellii ATCC BAA-1116]
MSISNTVTKVEEFEYDNASTEGIANNELEKTSNRTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=61972 M892_RS13480 WP_005425361.1 2911815..2912801(+) (rpoS) [Vibrio campbellii ATCC BAA-1116]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGACAATGCATCAACGGAAGGCATTGCTAACAACGA
GCTTGAAAAAACATCCAACCGAACCAAAACAGCAGCACGCGAAGAATTCGACGCGAGCAGCAAGAGCCTAGATGCTACTC
AGCTTTACTTAGGCGAAATTGGTTTTTCACCTCTACTTACGGCAGAAGAAGAAGTACTTTATGCTCGACGTGCGCTGCGT
GGCGATGAAGCTGCTCGCAAACGTATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGTCGATACAGCAATCG
TGGTCTAGCACTTCTTGATCTCATTGAAGAAGGTAATTTAGGTCTGATTCGTGCGGTAGAGAAGTTTGATCCAGAAAGAG
GCTTCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAATCAAACTCGTACAATC
CGTCTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGACCATGA
ACCAACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTTAATGAGCGCA
TTAGCTCTGTCGATACACCGATTGGTGGTGACGGCGAGAAAGCGCTACTGGATATTATTCCTGATGCCAACAACTCGGAT
CCTGAAGTTTCCACTCAGGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGA
AGTGCTAGCGCGTCGTTTTGGTCTGCTTGGCTATGAGCCATCAACACTTGAAGAAGTGGGACGTGAGATTGGTCTAACAC
GCGAACGTGTTCGTCAGATCCAGGTGGAAGGTTTACGTCGACTACGCGAGATCTTGATCAAACAAGGTCTGAATATGGAA
AACCTGTTCAACGTTGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

3D structure

• AlphaFold DB: A7MTT4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.881	100	0.857