Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LJU45_RS26135 Genome accession   NZ_CP085729
Coordinates   5281229..5281825 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain 59062CZ     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 5276229..5286825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJU45_RS26115 (LJU45_26115) - 5276421..5278178 (-) 1758 WP_029602742.1 Lon protease family protein -
  LJU45_RS26120 (LJU45_26120) matP 5278364..5278816 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  LJU45_RS26125 (LJU45_26125) ompA 5278948..5280018 (-) 1071 WP_002898408.1 porin OmpA -
  LJU45_RS26130 (LJU45_26130) sulA 5280371..5280880 (-) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  LJU45_RS26135 (LJU45_26135) sxy/tfoX 5281229..5281825 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  LJU45_RS26140 (LJU45_26140) yccS 5281839..5283974 (-) 2136 WP_002898422.1 YccS family putative transporter -
  LJU45_RS26145 (LJU45_26145) - 5283992..5284438 (-) 447 WP_002898425.1 YccF domain-containing protein -
  LJU45_RS26150 (LJU45_26150) helD 5284563..5286617 (+) 2055 WP_025368292.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=619707 LJU45_RS26135 WP_004179217.1 5281229..5281825(+) (sxy/tfoX) [Klebsiella pneumoniae strain 59062CZ]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=619707 LJU45_RS26135 WP_004179217.1 5281229..5281825(+) (sxy/tfoX) [Klebsiella pneumoniae strain 59062CZ]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGATGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAAAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51