Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NW949_RS03720 Genome accession   NZ_CP102960
Coordinates   777733..778815 (+) Length   360 a.a.
NCBI ID   WP_258415498.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 07-G-D     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 772733..783815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW949_RS03700 (NW949_03700) - 773105..774175 (-) 1071 WP_000460983.1 GGDEF domain-containing protein -
  NW949_RS03705 (NW949_03705) - 774493..775548 (+) 1056 WP_000258151.1 MraY family glycosyltransferase -
  NW949_RS03710 (NW949_03710) - 775718..776359 (-) 642 WP_000192947.1 YigZ family protein -
  NW949_RS03715 (NW949_03715) fakB1 776503..777369 (+) 867 WP_000686342.1 fatty acid kinase binding subunit FakB1 -
  NW949_RS03720 (NW949_03720) comFA 777733..778815 (+) 1083 WP_258415498.1 DEAD/DEAH box helicase Machinery gene
  NW949_RS03725 (NW949_03725) - 778808..779482 (+) 675 WP_001057965.1 ComF family protein -
  NW949_RS03730 (NW949_03730) raiA 779543..780115 (+) 573 WP_000617735.1 ribosome-associated translation inhibitor RaiA -
  NW949_RS03735 (NW949_03735) secA 780529..783060 (+) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  NW949_RS03740 (NW949_03740) - 783102..783200 (+) 99 WP_031789464.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42137.69 Da        Isoelectric Point: 9.8063

>NTDB_id=619684 NW949_RS03720 WP_258415498.1 777733..778815(+) (comFA) [Staphylococcus aureus strain 07-G-D]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRKRQTILLYAVTGAGKTEMMFQGIQYARIQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSRQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKNLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNKKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGYFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=619684 NW949_RS03720 WP_258415498.1 777733..778815(+) (comFA) [Staphylococcus aureus strain 07-G-D]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAATACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGACAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAATCTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACAATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGTTATTTCAAACTTAATAATAAGAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGATATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGGGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAG
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367