Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LJU42_RS09895 Genome accession   NZ_CP085726
Coordinates   2093578..2094192 (+) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain 56415CZ     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2088578..2099192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJU42_RS09875 (LJU42_09875) - 2088945..2090705 (-) 1761 WP_136345707.1 AAA family ATPase -
  LJU42_RS09880 (LJU42_09880) matP 2090891..2091343 (+) 453 WP_003035881.1 macrodomain Ter protein MatP -
  LJU42_RS09885 (LJU42_09885) ompA 2091435..2092493 (-) 1059 WP_003836839.1 porin OmpA -
  LJU42_RS09890 (LJU42_09890) sulA 2092851..2093360 (-) 510 WP_003035886.1 SOS-induced cell division inhibitor SulA -
  LJU42_RS09895 (LJU42_09895) sxy/tfoX 2093578..2094192 (+) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  LJU42_RS09900 (LJU42_09900) yccS 2094170..2096323 (-) 2154 WP_032941200.1 YccS family putative transporter -
  LJU42_RS09905 (LJU42_09905) - 2096342..2096788 (-) 447 WP_003035892.1 YccF domain-containing protein -
  LJU42_RS09910 (LJU42_09910) helD 2096914..2098968 (+) 2055 WP_096889538.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=619670 LJU42_RS09895 WP_003035889.1 2093578..2094192(+) (sxy/tfoX) [Citrobacter freundii strain 56415CZ]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=619670 LJU42_RS09895 WP_003035889.1 2093578..2094192(+) (sxy/tfoX) [Citrobacter freundii strain 56415CZ]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGAGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACCATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686