Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   LIT35_RS21120 Genome accession   NZ_CP085720
Coordinates   4260794..4262188 (-) Length   464 a.a.
NCBI ID   WP_286676290.1    Uniprot ID   -
Organism   Peribacillus asahii strain KF4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4255794..4267188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT35_RS21090 (LIT35_21190) flgL 4256108..4256989 (-) 882 WP_252282762.1 flagellar hook-associated protein FlgL -
  LIT35_RS21095 (LIT35_21195) flgK 4257008..4258561 (-) 1554 WP_252282763.1 flagellar hook-associated protein FlgK -
  LIT35_RS21100 (LIT35_21200) - 4258586..4259056 (-) 471 WP_252282764.1 flagellar protein FlgN -
  LIT35_RS21105 (LIT35_21205) flgM 4259133..4259396 (-) 264 WP_127762100.1 flagellar biosynthesis anti-sigma factor FlgM -
  LIT35_RS21110 (LIT35_21210) - 4259599..4260009 (-) 411 WP_252283597.1 TIGR03826 family flagellar region protein -
  LIT35_RS21115 (LIT35_21215) - 4260109..4260759 (-) 651 WP_252282765.1 ComF family protein -
  LIT35_RS21120 (LIT35_21220) comFA 4260794..4262188 (-) 1395 WP_286676290.1 DEAD/DEAH box helicase Machinery gene
  LIT35_RS21125 (LIT35_21225) - 4262300..4263289 (+) 990 WP_252282766.1 nuclease-related domain-containing protein -
  LIT35_RS21130 (LIT35_21230) - 4263398..4264240 (-) 843 WP_127762105.1 DegV family protein -
  LIT35_RS21135 (LIT35_21235) - 4264370..4265053 (-) 684 WP_127762106.1 response regulator transcription factor -
  LIT35_RS21140 (LIT35_21240) - 4265104..4266246 (-) 1143 WP_127762107.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52324.55 Da        Isoelectric Point: 8.7780

>NTDB_id=619641 LIT35_RS21120 WP_286676290.1 4260794..4262188(-) (comFA) [Peribacillus asahii strain KF4]
MNTISRSPLSIPQKAYSTELQHHLFGRQLLAAEIPFSLDVLETHIEQGYVAKTFGIELDHCIRCGNQDKQLFYTFPCAIC
GQLCTYCRSCIMMGRVSECTPLYTWTGPTYDFHVPKSVMNWSGTLSEGQQTASDRVKRAILHQEELLVWAVCGAGKTEVL
FAGIEAGLLAGKRICIATPRTDVVLELAPRLKKAFPFIEVAALYGGSDDRHKLAPISVATTHQLFRFKEAFDAMIIDEVD
AFPYSMDPSLHYAVQKAKKRTAATIYLTATPSKQMQKQYRSGKLQAVTIPARYHRQPIPVPEMKWCGNWAKRFQQKKIPR
PVQDWVNERIERQIPILLFFPSIAVMETARPLFQNFPAVYAEHPHRKERVQALRDGELQGLLTTTILERGVTIERLEVAV
IGAEHEVFTESALVQIAGRVGRSFAYPTGNITFFHYGKSKAMVEAIKHITSMNEEARKHGLLDG

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=619641 LIT35_RS21120 WP_286676290.1 4260794..4262188(-) (comFA) [Peribacillus asahii strain KF4]
GTGAATACGATTTCTCGCTCCCCGCTTTCTATCCCTCAAAAAGCTTATTCCACTGAACTCCAGCATCATTTATTTGGCCG
TCAATTGTTAGCGGCTGAAATTCCGTTTTCCCTCGATGTACTTGAGACACATATTGAACAAGGTTATGTTGCAAAAACGT
TTGGCATTGAATTGGATCATTGTATTCGGTGCGGCAATCAAGACAAGCAGTTATTTTATACGTTTCCGTGTGCGATATGC
GGGCAGCTCTGCACGTATTGTCGTTCGTGCATTATGATGGGGCGTGTGAGCGAATGTACGCCGCTGTATACGTGGACCGG
TCCGACTTATGATTTCCATGTCCCGAAAAGCGTGATGAATTGGTCAGGTACACTTTCAGAAGGTCAACAAACTGCATCGG
ACCGAGTGAAGCGAGCCATTCTTCATCAAGAAGAGCTTCTCGTTTGGGCTGTTTGTGGAGCTGGAAAAACAGAAGTGCTG
TTTGCGGGAATCGAAGCAGGACTGCTTGCTGGAAAGCGGATTTGTATTGCAACACCGCGAACAGATGTCGTATTGGAATT
AGCGCCTCGGTTGAAAAAAGCATTCCCATTTATCGAAGTGGCCGCCCTTTATGGAGGCAGTGATGATCGACATAAGCTAG
CACCGATTAGCGTGGCGACGACACATCAGCTCTTTCGCTTTAAAGAAGCGTTTGATGCCATGATTATCGATGAGGTCGAT
GCCTTTCCGTATTCGATGGATCCTTCGCTTCACTATGCGGTACAAAAAGCAAAGAAGCGGACCGCTGCGACCATTTATTT
AACGGCCACACCATCGAAACAAATGCAAAAGCAATATCGAAGTGGCAAACTTCAAGCGGTCACTATCCCGGCACGTTATC
ATCGCCAGCCGATTCCGGTCCCAGAGATGAAATGGTGCGGCAACTGGGCGAAGCGGTTTCAGCAAAAGAAAATTCCGCGT
CCCGTTCAAGATTGGGTGAATGAACGAATCGAACGCCAAATTCCTATTTTATTATTCTTCCCAAGCATTGCGGTGATGGA
AACCGCACGCCCTCTTTTTCAAAACTTCCCGGCCGTTTATGCAGAGCATCCGCATCGGAAAGAACGCGTGCAAGCATTAC
GAGACGGTGAACTGCAAGGTTTATTAACAACGACGATTTTAGAACGGGGCGTGACGATTGAGCGTTTAGAGGTCGCGGTT
ATTGGAGCGGAACACGAAGTTTTTACGGAAAGCGCCCTTGTCCAAATTGCCGGTCGCGTTGGACGCAGTTTCGCTTACCC
AACAGGGAACATTACTTTTTTTCATTATGGAAAAAGCAAGGCAATGGTAGAAGCGATTAAACATATTACATCGATGAATG
AAGAAGCGAGAAAGCATGGGCTTCTCGATGGCTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(125-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

50.221

97.414

0.489