Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LIT35_RS20305 Genome accession   NZ_CP085720
Coordinates   4103985..4104938 (-) Length   317 a.a.
NCBI ID   WP_127761963.1    Uniprot ID   -
Organism   Peribacillus asahii strain KF4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4098985..4109938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT35_RS20290 (LIT35_20390) - 4100545..4101567 (-) 1023 WP_252282678.1 siderophore ABC transporter substrate-binding protein -
  LIT35_RS20295 (LIT35_20395) - 4102275..4103042 (-) 768 WP_252282679.1 ABC transporter ATP-binding protein -
  LIT35_RS20300 (LIT35_20400) - 4103039..4103995 (-) 957 WP_252282680.1 iron chelate uptake ABC transporter family permease subunit -
  LIT35_RS20305 (LIT35_20405) ceuB 4103985..4104938 (-) 954 WP_127761963.1 ABC transporter permease Machinery gene
  LIT35_RS20310 (LIT35_20410) - 4105436..4105708 (+) 273 WP_127761964.1 DUF1450 domain-containing protein -
  LIT35_RS20315 (LIT35_20415) shc 4105778..4107658 (+) 1881 WP_353737913.1 squalene--hopene cyclase -
  LIT35_RS20320 (LIT35_20420) - 4107751..4108353 (-) 603 WP_252282681.1 methyltransferase domain-containing protein -
  LIT35_RS20325 (LIT35_20425) - 4108367..4109062 (-) 696 WP_127761966.1 ABC transporter ATP-binding protein -
  LIT35_RS20330 (LIT35_20430) - 4109059..4109871 (-) 813 WP_252282682.1 ABC transporter permease subunit -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34691.83 Da        Isoelectric Point: 9.7153

>NTDB_id=619637 LIT35_RS20305 WP_127761963.1 4103985..4104938(-) (ceuB) [Peribacillus asahii strain KF4]
MRIWMLIVAAVVLSFVSLFIGAIDIKPSDLLDWNSDKTQIFLASRVPRLMAIILAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDAAKLGILISMLFFTNVTYTQQVIFSFAFALVGTLVFMQILDRIKFKDVIFVPLIGIMYGNILSSVTTFFAYEADLL
QNISSWLMGSFTLIIAGRYELLYISIPAVILAYLYANKFTVAGMGEDFAKNLGLSYKFVLNIGLILVAIIATTVVLTVGV
IPFLGLIVPNIVSLYLGDNLRKTIPHTAVLGVVFLLVCDIIGRIIVHPYEIPVNVTVAVIGSVIFLIMLFRGRAYAK

Nucleotide


Download         Length: 954 bp        

>NTDB_id=619637 LIT35_RS20305 WP_127761963.1 4103985..4104938(-) (ceuB) [Peribacillus asahii strain KF4]
ATGAGAATATGGATGTTAATAGTTGCAGCTGTAGTCCTGTCATTTGTATCGCTATTTATCGGGGCGATTGATATTAAGCC
GAGTGACTTGCTCGACTGGAATTCGGATAAGACACAAATTTTCTTAGCAAGTCGAGTGCCTCGTTTAATGGCGATTATAT
TGGCAGGAGCAGGAATGAGTATTGCTGGTTTAATTATGCAGTCTTTAAGTCGAAATAAATTTGTCTCTCCAACGACTGCT
GGTACGTTAGATGCAGCAAAACTAGGAATTTTAATTTCAATGCTGTTCTTTACCAATGTAACCTATACGCAGCAAGTTAT
TTTTAGCTTTGCCTTTGCTTTAGTAGGAACATTAGTTTTTATGCAAATTTTGGATCGTATTAAATTTAAAGATGTCATTT
TCGTTCCACTAATTGGGATTATGTACGGGAACATTTTGTCATCGGTTACGACATTTTTTGCATATGAAGCAGACCTTCTC
CAAAATATTTCATCTTGGTTAATGGGAAGCTTCACATTAATTATCGCAGGACGCTATGAACTGTTATACATAAGTATTCC
AGCGGTTATTTTAGCGTATCTTTATGCGAATAAATTTACAGTCGCAGGTATGGGGGAAGACTTCGCTAAAAACTTAGGCT
TAAGTTATAAGTTTGTATTAAATATAGGTCTTATCCTAGTTGCCATTATTGCTACAACTGTCGTACTAACTGTCGGCGTT
ATTCCGTTTTTAGGTTTAATTGTTCCTAATATTGTATCTCTTTATTTAGGTGATAATTTACGCAAAACTATTCCACATAC
AGCAGTATTAGGCGTTGTCTTCCTGTTAGTATGTGATATTATTGGGCGTATTATTGTTCACCCTTATGAGATTCCGGTTA
ACGTAACTGTGGCAGTAATCGGTAGTGTGATCTTCTTAATTATGTTATTTAGGGGGAGAGCATATGCGAAGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(11-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.482

94.953

0.527