Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LIT35_RS16150 Genome accession   NZ_CP085720
Coordinates   3277325..3279040 (-) Length   571 a.a.
NCBI ID   WP_127761283.1    Uniprot ID   A0A3Q9RPM3
Organism   Peribacillus asahii strain KF4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3272325..3284040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT35_RS16135 (LIT35_16215) - 3272997..3274574 (-) 1578 WP_127761280.1 FapA family protein -
  LIT35_RS16140 (LIT35_16220) spo0A 3274739..3275527 (-) 789 WP_127761281.1 sporulation transcription factor Spo0A -
  LIT35_RS16145 (LIT35_16225) spoIVB 3275899..3277194 (-) 1296 WP_127761282.1 SpoIVB peptidase -
  LIT35_RS16150 (LIT35_16230) recN 3277325..3279040 (-) 1716 WP_127761283.1 DNA repair protein RecN Machinery gene
  LIT35_RS16155 (LIT35_16235) argR 3279061..3279510 (-) 450 WP_119115461.1 transcriptional regulator ArgR -
  LIT35_RS16160 (LIT35_16240) - 3279796..3280623 (-) 828 WP_127761284.1 TlyA family RNA methyltransferase -
  LIT35_RS16165 (LIT35_16245) dxs 3280628..3282520 (-) 1893 WP_127761285.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LIT35_RS16170 (LIT35_16250) - 3282954..3283844 (-) 891 WP_127762614.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 64583.56 Da        Isoelectric Point: 5.2009

>NTDB_id=619626 LIT35_RS16150 WP_127761283.1 3277325..3279040(-) (recN) [Peribacillus asahii strain KF4]
MLSELSIKNFAIIDSLAISLEKGLTVLTGETGAGKSIIIDAVHLLVGGRGSAEFIRHGETKAEIEGLFQIDEPQHPVFVK
ASEFGIDISDGMVVIRREMSTSGKSVCRVNGKLVTIATLREIGRTLIDIHGQHEHQELMDERLHLPLLDQFGGEEVMLAL
LEYEKLYKRYNTAQKQLKSLSQDEQQMVHRLDLIQFQFDEIQKADLKLHEDEQLLEERKKINNYEKIHEALQTSYNALNG
EQHGLDWLSIAMHHLEEAANLDESLKNSSDIVSNSYFLLEDAISTIRDQLDSLDFDTERIDFIEGRLNEINQLKRKYGRT
IEEIVEYGAKIEEEIETLLNRETHIAKLEKELNSIKADLLIEAKHLSSLRQTYAEQLTKKIKQELKELYMEKTVFEAHFH
QTAHTFDETIDREINRTGLDVMEFYISTNPGEPLKPLSKIASGGEMSRIMLALKSIFSQHQGITSIIFDEVDTGVSGRVA
QSIGEKIYKVATGSQVLCISHLPQVAAMADTHLFIAKKVTEGRTHTSVTPLAEEEKIKEIGRMIAGVEITDLTKQHANEL
IQQAHKIKVTS

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=619626 LIT35_RS16150 WP_127761283.1 3277325..3279040(-) (recN) [Peribacillus asahii strain KF4]
TTGTTATCAGAATTATCGATTAAAAATTTTGCCATTATAGATAGTTTAGCGATTTCTTTAGAAAAAGGTTTAACGGTGCT
AACTGGAGAAACGGGAGCGGGAAAGTCCATTATTATTGATGCTGTTCACTTATTAGTAGGGGGACGCGGGTCAGCAGAGT
TTATTCGACATGGGGAAACGAAGGCTGAAATCGAAGGGCTATTTCAAATTGATGAGCCGCAGCACCCTGTTTTTGTTAAA
GCATCGGAATTTGGGATTGATATAAGTGATGGCATGGTTGTTATAAGACGAGAAATGTCTACGAGTGGCAAAAGCGTATG
TCGAGTAAACGGAAAGCTTGTGACCATCGCTACGTTACGTGAAATTGGTCGAACGCTTATCGATATTCATGGACAGCACG
AACATCAAGAGCTGATGGATGAACGTCTTCATTTACCTTTACTTGATCAATTTGGCGGGGAAGAGGTTATGTTAGCGCTT
TTGGAATATGAAAAGCTATATAAGCGCTATAACACTGCTCAGAAGCAGTTAAAAAGTCTCAGCCAGGACGAGCAGCAAAT
GGTGCATCGACTCGATTTAATTCAGTTTCAATTTGATGAAATTCAAAAGGCTGATTTGAAGCTGCACGAAGACGAGCAGC
TTCTTGAGGAACGAAAAAAAATTAATAACTATGAAAAAATTCATGAAGCTCTGCAAACGAGCTACAATGCTTTGAATGGT
GAACAGCATGGGTTAGATTGGCTGTCGATTGCGATGCATCATTTAGAAGAAGCAGCTAACCTTGATGAATCTTTAAAGAA
TAGTTCAGATATTGTTTCAAATAGTTACTTTTTATTAGAAGATGCCATTTCAACGATTCGTGATCAGCTGGATTCTCTTG
ATTTTGATACGGAACGGATTGATTTTATTGAAGGGCGCCTAAATGAAATTAACCAATTGAAACGTAAATACGGACGTACG
ATTGAGGAAATTGTCGAATATGGAGCAAAGATTGAAGAAGAAATTGAAACGTTGCTTAATCGGGAAACGCATATTGCTAA
GCTGGAAAAGGAATTAAATTCGATTAAAGCAGATTTACTCATTGAGGCCAAACATTTATCGAGTCTTCGTCAAACCTATG
CAGAGCAATTAACGAAAAAAATTAAGCAAGAACTGAAAGAGTTATATATGGAAAAAACTGTTTTTGAAGCTCATTTTCAT
CAAACGGCTCATACATTTGATGAAACAATCGACAGAGAAATTAATCGAACAGGACTTGATGTCATGGAGTTTTATATTTC
AACGAATCCTGGTGAACCGCTAAAACCGTTATCGAAAATTGCCTCTGGCGGTGAAATGTCTCGTATTATGTTGGCTTTAA
AAAGTATTTTTTCGCAGCATCAAGGGATTACATCGATTATTTTTGATGAAGTCGATACAGGAGTAAGCGGGCGAGTTGCT
CAATCGATTGGAGAAAAAATTTACAAAGTAGCTACAGGTTCTCAAGTGCTTTGTATTTCTCATTTACCTCAAGTCGCTGC
AATGGCTGATACGCATTTGTTTATTGCTAAAAAAGTGACAGAAGGAAGAACACATACATCTGTTACACCATTAGCTGAGG
AAGAAAAAATAAAAGAAATCGGCCGGATGATAGCTGGTGTTGAAATTACTGATTTAACGAAGCAACATGCTAATGAATTA
ATTCAACAAGCTCATAAAATTAAAGTCACATCCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q9RPM3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.632

100

0.622