Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LIT35_RS05570 Genome accession   NZ_CP085720
Coordinates   1088105..1089922 (+) Length   605 a.a.
NCBI ID   WP_127759395.1    Uniprot ID   -
Organism   Peribacillus asahii strain KF4     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1083105..1094922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT35_RS05550 (LIT35_05560) - 1083184..1084251 (+) 1068 WP_127759391.1 SMI1/KNR4 family protein -
  LIT35_RS05555 (LIT35_05565) - 1084785..1085414 (-) 630 WP_127759392.1 homoserine/threonine efflux transporter -
  LIT35_RS05560 (LIT35_05570) - 1085556..1086383 (+) 828 WP_127759393.1 TrmB family transcriptional regulator -
  LIT35_RS05565 (LIT35_05575) - 1086766..1087977 (+) 1212 WP_127759394.1 competence protein CoiA family protein -
  LIT35_RS05570 (LIT35_05580) pepF 1088105..1089922 (+) 1818 WP_127759395.1 oligoendopeptidase F Regulator
  LIT35_RS05575 (LIT35_05585) - 1089974..1090141 (-) 168 WP_164853137.1 hypothetical protein -
  LIT35_RS05580 (LIT35_05590) - 1090722..1091594 (-) 873 WP_252283479.1 ClpXP adapter SpxH family protein -
  LIT35_RS05585 (LIT35_05595) - 1091618..1092022 (-) 405 WP_127759397.1 globin -
  LIT35_RS05590 (LIT35_05600) - 1092300..1092923 (-) 624 WP_252283152.1 lytic transglycosylase domain-containing protein -
  LIT35_RS05595 (LIT35_05605) - 1092952..1093530 (-) 579 WP_127759399.1 CYTH domain-containing protein -
  LIT35_RS05600 (LIT35_05610) - 1093854..1094483 (+) 630 WP_127759400.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69733.98 Da        Isoelectric Point: 4.6617

>NTDB_id=619618 LIT35_RS05570 WP_127759395.1 1088105..1089922(+) (pepF) [Peribacillus asahii strain KF4]
MTKETSVNTLPSRQDITVEDTWRLEDIFASDEAWEAAYKEVKEELKKANQFQGKLGESADQLYNALQFQDNVLEKLGKVY
AYSHMRYDQDTTNSLYQGFDDRAKNLYAQASSAFAYIVPELLSIEESTISQFTAEKSELKLYEHAIEEINLQRPHVLSAT
EEALLAQASEVFDASSNTFGMLNNADLKFPTIKDEDGNDAEITHGRYIRFLESTDCRVRQEAFEGVYSTYGKFRNTFAST
LAGQVKSQNFNASVRKYDNARQAALSNNNIPEAVYDNLVETVNEHLPLLHRYLDLRKKVLKLDELHMYDLFTPLVQEVKM
EVTYEEAKDYVLKGLAPLGEDYLQVLKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQNNVNNLFTLIHEFGHS
VHSYYTRKYQPYPYGNYSIFVAEVASTCNENLLNDYLLNTIEDEKKRIYLLNHYLEGFRGTLFRQTMFAEFEHTIHVKAQ
NGEALTADMLTEEYYALNKKYFGDNMVIDEEIGLEWARIPHFYYNYYVYQYATGISAATALSKQILEEGEPAVNRYIEFL
KSGSSDYPIEVLKKAGVDMTQAEPVREALKVFEEKLNELESLLLK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=619618 LIT35_RS05570 WP_127759395.1 1088105..1089922(+) (pepF) [Peribacillus asahii strain KF4]
ATGACAAAGGAAACATCGGTGAATACATTACCATCACGCCAAGATATTACGGTTGAGGATACATGGAGACTTGAGGATAT
TTTTGCATCAGATGAGGCTTGGGAAGCGGCTTACAAGGAAGTAAAAGAAGAGTTAAAGAAAGCGAATCAATTCCAAGGCA
AGTTAGGAGAGAGTGCAGATCAATTATATAATGCGCTGCAATTTCAAGATAATGTGTTAGAGAAGTTAGGGAAAGTCTAT
GCGTACTCTCATATGCGTTATGATCAAGATACAACGAACTCTCTTTATCAAGGGTTCGATGACCGAGCGAAAAATTTATA
TGCACAAGCATCCAGTGCATTTGCTTATATTGTGCCTGAACTGTTAAGCATTGAGGAAAGCACAATTTCTCAGTTTACGG
CTGAAAAGAGTGAATTGAAATTATATGAACATGCGATTGAAGAAATTAATTTACAGCGTCCGCATGTATTATCTGCGACA
GAAGAGGCATTGTTAGCTCAAGCTTCAGAAGTGTTTGATGCCTCTAGTAATACGTTTGGAATGTTAAATAATGCGGATTT
GAAATTCCCAACGATTAAAGATGAAGACGGCAATGATGCAGAGATTACGCATGGCCGCTATATTCGTTTTTTAGAAAGTA
CGGATTGTCGTGTTCGTCAGGAAGCTTTTGAAGGAGTATATAGTACGTATGGCAAGTTCCGTAATACATTTGCGAGCACG
CTAGCCGGACAAGTGAAGAGCCAAAACTTTAATGCATCTGTCCGTAAATATGACAATGCTCGTCAAGCTGCTCTAAGCAA
TAATAATATTCCAGAAGCGGTGTATGATAATTTAGTGGAAACAGTGAATGAGCATCTTCCTTTACTACACCGCTATTTAG
ATTTACGCAAGAAAGTTCTAAAGCTTGATGAACTTCATATGTACGATTTATTTACACCGCTTGTACAAGAAGTGAAGATG
GAAGTAACGTATGAAGAAGCGAAAGACTATGTTTTAAAAGGTCTTGCGCCGCTTGGTGAAGATTATTTACAAGTTCTAAA
AGAAGGATTTGAAAATCGTTGGGTCGATGTGCATGAGAATAAAGGAAAACGCAGCGGTGCGTATTCTTCAGGTACATATG
GCACAAATCCATATATTTTAATGAACTGGCAAAATAACGTGAACAACTTATTTACGCTTATTCATGAATTCGGTCATTCT
GTTCATAGTTACTACACGCGTAAATATCAGCCATATCCGTATGGAAACTACTCGATTTTCGTAGCGGAAGTAGCTTCGAC
ATGTAATGAGAACTTATTAAATGATTATTTATTAAATACAATTGAGGACGAGAAGAAGCGAATTTATTTATTAAATCATT
ATTTAGAAGGCTTCCGAGGCACATTATTCCGTCAAACGATGTTTGCAGAGTTTGAGCATACAATTCACGTAAAAGCTCAA
AATGGTGAGGCATTAACAGCGGATATGCTTACGGAAGAGTACTATGCGTTAAATAAGAAGTATTTTGGCGATAACATGGT
GATTGATGAAGAAATCGGCTTAGAGTGGGCGAGAATTCCGCATTTCTACTACAATTATTATGTGTATCAATATGCGACAG
GTATTAGCGCAGCTACAGCATTAAGTAAACAAATTCTTGAAGAAGGAGAGCCAGCGGTTAACAGATATATTGAATTCTTA
AAATCAGGCAGCTCTGATTATCCGATTGAAGTATTGAAAAAAGCTGGAGTCGATATGACGCAAGCCGAGCCAGTTCGTGA
AGCATTAAAAGTGTTTGAAGAGAAATTAAATGAATTAGAGTCACTTCTATTAAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.598

96.694

0.489