Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   LIT35_RS05495 Genome accession   NZ_CP085720
Coordinates   1072601..1072783 (+) Length   60 a.a.
NCBI ID   WP_119118137.1    Uniprot ID   A0A398B0S8
Organism   Peribacillus asahii strain KF4     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1067601..1077783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT35_RS05475 (LIT35_05485) clpB 1067862..1070454 (+) 2593 Protein_973 ATP-dependent chaperone ClpB -
  LIT35_RS05480 (LIT35_05490) - 1070503..1070691 (-) 189 WP_127759381.1 YjzD family protein -
  LIT35_RS05485 (LIT35_05495) - 1070923..1071642 (+) 720 WP_252283149.1 hydrolase -
  LIT35_RS05490 (LIT35_05500) - 1071714..1072526 (+) 813 WP_127759383.1 hypothetical protein -
  LIT35_RS05495 (LIT35_05505) comZ 1072601..1072783 (+) 183 WP_119118137.1 ComZ family protein Regulator
  LIT35_RS05500 (LIT35_05510) - 1072973..1073908 (+) 936 WP_127759384.1 beta-ketoacyl-ACP synthase III -
  LIT35_RS05505 (LIT35_05515) fabF 1073959..1075197 (+) 1239 WP_127759385.1 beta-ketoacyl-ACP synthase II -
  LIT35_RS05510 (LIT35_05520) - 1075383..1076147 (+) 765 WP_164853135.1 DUF2268 domain-containing putative Zn-dependent protease -
  LIT35_RS05515 (LIT35_05525) - 1076259..1077014 (+) 756 WP_127759387.1 YjbA family protein -
  LIT35_RS05520 (LIT35_05530) - 1077156..1077308 (+) 153 WP_164853136.1 YfhD family protein -

Sequence

Protein


Download         Length: 60 a.a.        Molecular weight: 6828.94 Da        Isoelectric Point: 4.2517

>NTDB_id=619616 LIT35_RS05495 WP_119118137.1 1072601..1072783(+) (comZ) [Peribacillus asahii strain KF4]
MSEDKTLEFMAIAMKYFPEAKAQLEANGIPFSMEMAAPFMDLFKKVMQEAYELGKSDAQQ

Nucleotide


Download         Length: 183 bp        

>NTDB_id=619616 LIT35_RS05495 WP_119118137.1 1072601..1072783(+) (comZ) [Peribacillus asahii strain KF4]
ATGAGTGAAGATAAAACGCTTGAATTTATGGCGATTGCGATGAAGTACTTCCCAGAAGCAAAAGCGCAGTTAGAGGCAAA
CGGCATTCCTTTTTCAATGGAAATGGCGGCTCCGTTTATGGATTTATTTAAAAAAGTCATGCAAGAAGCATATGAGCTAG
GAAAAAGCGACGCTCAGCAGTAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A398B0S8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

66.102

98.333

0.65