Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   LIS76_RS21060 Genome accession   NZ_CP085717
Coordinates   4295693..4297087 (-) Length   464 a.a.
NCBI ID   WP_252291894.1    Uniprot ID   -
Organism   Peribacillus asahii strain CMF4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4290693..4302087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS76_RS21035 (LIS76_21085) flgK 4291882..4293450 (-) 1569 WP_252291886.1 flagellar hook-associated protein FlgK -
  LIS76_RS21040 (LIS76_21090) - 4293475..4293945 (-) 471 WP_252291888.1 flagellar protein FlgN -
  LIS76_RS21045 (LIS76_21095) flgM 4294022..4294285 (-) 264 WP_252291890.1 flagellar biosynthesis anti-sigma factor FlgM -
  LIS76_RS21050 (LIS76_21100) - 4294498..4294908 (-) 411 WP_252295544.1 TIGR03826 family flagellar region protein -
  LIS76_RS21055 (LIS76_21105) - 4295008..4295700 (-) 693 WP_252291892.1 ComF family protein -
  LIS76_RS21060 (LIS76_21110) comFA 4295693..4297087 (-) 1395 WP_252291894.1 DEAD/DEAH box helicase Machinery gene
  LIS76_RS21065 (LIS76_21115) - 4297199..4297441 (+) 243 WP_252291896.1 hypothetical protein -
  LIS76_RS21070 (LIS76_21120) - 4297622..4298737 (+) 1116 WP_252291898.1 transposase -
  LIS76_RS21075 (LIS76_21125) - 4298871..4299707 (+) 837 WP_286676646.1 nuclease-related domain-containing protein -
  LIS76_RS21080 (LIS76_21130) - 4299828..4300670 (-) 843 WP_252291900.1 DegV family protein -
  LIS76_RS21085 (LIS76_21135) - 4300799..4301482 (-) 684 WP_252291902.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52036.21 Da        Isoelectric Point: 8.4067

>NTDB_id=619595 LIS76_RS21060 WP_252291894.1 4295693..4297087(-) (comFA) [Peribacillus asahii strain CMF4]
MNTISHSPLSIPQQAYSTELQHHLFGRQLLAAEIPFSLDVLETHIEQGYVAKTFGIELDHCIRCGNQDKHLFYTFPCAIC
GQLCTYCRSCIMMGRVSECTPLYTWTGPAYEFHVPKSVMNWSGTLSEGQQTASDRVKQAILHQEELLVWAVCGAGKTEVL
FAGIEAGLLAGKRICIATPRTDVVLELAPRLKKAFPFIEVAALYGGSDDRHKLAPLTVATTHQLFRFKEAFDVMIIDEVD
AFPYSMDPSLHYAVQKAKKQTAATIYLTATPSKQMKKQYRSGKLQAVTIPARYHRQPIPVPEMKWCGNWAKQFQQKKIPH
PVQDWVNERLQSKTPILLFFPSIAVMEMASSLFPNLPAVYAEHPNRKERVQALRDGELQGLLTTTILERGVTIERLEVAV
IGAEHEVFTESALVQIAGRVGRSFAYPTGNITFFHYGKSKAMVEAIKHITSMNEEARKRGLLNG

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=619595 LIS76_RS21060 WP_252291894.1 4295693..4297087(-) (comFA) [Peribacillus asahii strain CMF4]
GTGAACACGATTTCTCACTCCCCGCTTTCTATCCCCCAACAAGCTTATTCTACTGAACTTCAGCATCATTTATTTGGCCG
TCAATTGTTAGCGGCTGAAATTCCGTTTTCCCTCGATGTACTTGAGACACATATTGAACAAGGTTATGTTGCAAAAACGT
TTGGTATTGAATTGGATCATTGTATTCGGTGCGGCAATCAAGACAAGCATTTATTTTATACGTTTCCGTGTGCCATATGC
GGGCAACTTTGCACGTATTGTCGTTCGTGCATTATGATGGGGCGTGTGAGTGAATGTACGCCGCTATATACGTGGACCGG
TCCGGCCTATGAGTTCCATGTCCCGAAAAGCGTGATGAATTGGTCAGGTACACTTTCAGAAGGTCAGCAAACTGCATCGG
ACCGAGTGAAGCAAGCGATTCTTCATCAAGAAGAGCTTCTCGTTTGGGCCGTTTGTGGAGCTGGAAAAACAGAAGTGCTG
TTTGCAGGAATCGAAGCAGGACTGCTTGCCGGAAAGCGAATTTGCATCGCAACACCGCGAACAGATGTCGTACTGGAATT
AGCTCCTCGGTTGAAAAAAGCATTCCCATTTATCGAAGTAGCCGCCCTTTATGGAGGCAGTGACGATCGACATAAGCTAG
CGCCGCTTACTGTGGCGACAACACATCAGCTCTTTCGCTTTAAAGAAGCGTTTGATGTCATGATTATCGATGAAGTCGAT
GCCTTTCCGTATTCGATGGACCCTTCGCTTCACTATGCGGTACAAAAAGCAAAGAAACAAACGGCCGCGACCATTTATTT
AACGGCTACACCATCGAAACAAATGAAAAAGCAATATCGAAGCGGCAAGCTTCAAGCGGTCACTATCCCGGCGCGTTATC
ATCGCCAGCCGATTCCGGTTCCTGAGATGAAATGGTGCGGCAACTGGGCGAAGCAGTTTCAGCAAAAGAAAATTCCACAC
CCTGTTCAAGATTGGGTAAATGAACGTCTACAAAGCAAAACTCCCATTTTATTATTCTTCCCAAGTATTGCGGTGATGGA
AATGGCAAGCTCTCTTTTTCCGAATCTCCCGGCTGTTTATGCGGAGCATCCGAATCGGAAGGAACGGGTGCAAGCATTAC
GAGACGGTGAACTGCAAGGTTTATTAACAACGACGATTTTAGAACGAGGTGTGACGATTGAGCGTTTAGAGGTCGCGGTT
ATTGGAGCGGAGCACGAAGTTTTTACGGAAAGCGCCCTTGTCCAAATTGCCGGCCGCGTTGGGCGCAGTTTCGCTTACCC
AACAGGGAACATTACTTTTTTTCATTATGGAAAAAGCAAGGCAATGGTAGAAGCTATCAAACATATTACATCGATGAATG
AAGAAGCGAGAAAGCGTGGGCTTCTCAATGGCTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(335-422)

Type III restriction enzyme, res subunit (ResIII)

(125-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

50.885

97.414

0.496