Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NW979_RS03580 Genome accession   NZ_CP102959
Coordinates   759221..760192 (+) Length   323 a.a.
NCBI ID   WP_258413747.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 12-G-51     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 754221..765192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW979_RS03565 (NW979_03565) nrdI 755294..755692 (+) 399 WP_000692521.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  NW979_RS03570 (NW979_03570) nrdE 755655..757760 (+) 2106 WP_154283874.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  NW979_RS03575 (NW979_03575) nrdF 757880..758851 (+) 972 WP_000562498.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  NW979_RS03580 (NW979_03580) ceuB 759221..760192 (+) 972 WP_258413747.1 ABC transporter permease Machinery gene
  NW979_RS03585 (NW979_03585) - 760179..761135 (+) 957 WP_001245585.1 iron chelate uptake ABC transporter family permease subunit -
  NW979_RS03590 (NW979_03590) - 761132..761893 (+) 762 WP_258413748.1 ABC transporter ATP-binding protein -
  NW979_RS03595 (NW979_03595) - 762012..763040 (+) 1029 WP_258413749.1 siderophore ABC transporter substrate-binding protein -
  NW979_RS03600 (NW979_03600) - 763076..764722 (-) 1647 WP_258413750.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35574.10 Da        Isoelectric Point: 10.1029

>NTDB_id=619595 NW979_RS03580 WP_258413747.1 759221..760192(+) (ceuB) [Staphylococcus aureus strain 12-G-51]
MKYLLKGKILLLLLILLTIISLFIGVSELSIKDIFHLSDSQQNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVS
PTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSICGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLR
TNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVV
TVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNY
AQQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=619595 NW979_RS03580 WP_258413747.1 759221..760192(+) (ceuB) [Staphylococcus aureus strain 12-G-51]
ATGAAGTATTTATTAAAGGGAAAAATTTTGCTTCTATTACTTATATTGCTAACAATCATTTCGTTGTTTATAGGTGTCAG
TGAACTGTCTATTAAAGATATCTTTCATTTATCAGACTCACAGCAAAATATATTGTTCTCAAGCCGAATACCGAGAACGA
TGAGTATTTTAATTGCTGGTAGTTCATTAGCTTTAGCTGGCCTAATCATGCAACAAATGATGCAAAATAAGTTTGTTAGT
CCAACTACAGCTGGGACGATGGAGTGGGCAAAATTAGGTATCTTAATTGCCTTATTATTCTTTCCAACTGGTCATATTTT
ATTAAAATTAGTATTTGCTGTTATTTGCAGTATTTGCGGTACGTTTTTATTTGTTAAAATCATTGATTTTATAAAAGTGA
AAGATGTCATTTTTGTACCGCTTCTAGGAATTATGATGGGTGGGATTGTTGCAAGTTTCACAACCTTCATCTCATTGCGC
ACGAATGCTGTTCAAAGCATTGGTAACTGGCTTAACGGGAACTTTGCCATTATCACAAGTGGACGCTATGAAATTTTATA
TTTAAGTATTCCTCTTTTAGCATTGACATATCTTTTTGCGAATCATTTCACGATTGTAGGAATGGGTAAAGACTTTACTA
ATAATTTAGGTTTGAGTTACGAAAAATTAATTAACATCGCATTGTTTATTACTGCAACTATTACAGCATTGGTAGTGGTG
ACTGTTGGAACATTACCGTTCTTAGGACTAGTAATACCAAATATTATTTCAATTTATCGAGGTGATCATTTGAAAAATGC
TATCCCTCATACGATGATGTTAGGTGCCATCTTTGTATTGTTTTCTGATATAGTTGGCAGAATTGTAGTTTATCCTTATG
AAATTAATATTGGTTTAACAATAGGTGTATTTGGAACAATCATTTTCCTTATCTTACTTATGAAAGGTAGGAAAAATTAT
GCGCAACAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.812

99.071

0.474