Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LIS76_RS20240 Genome accession   NZ_CP085717
Coordinates   4131528..4132481 (-) Length   317 a.a.
NCBI ID   WP_252291696.1    Uniprot ID   -
Organism   Peribacillus asahii strain CMF4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4126528..4137481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS76_RS20225 (LIS76_20275) - 4128545..4129567 (-) 1023 WP_252291690.1 siderophore ABC transporter substrate-binding protein -
  LIS76_RS20230 (LIS76_20280) - 4129809..4130585 (-) 777 WP_252291692.1 ABC transporter ATP-binding protein -
  LIS76_RS20235 (LIS76_20285) - 4130582..4131538 (-) 957 WP_252291694.1 iron chelate uptake ABC transporter family permease subunit -
  LIS76_RS20240 (LIS76_20290) ceuB 4131528..4132481 (-) 954 WP_252291696.1 ABC transporter permease Machinery gene
  LIS76_RS20245 (LIS76_20295) - 4132919..4133197 (+) 279 WP_252291698.1 DUF1450 domain-containing protein -
  LIS76_RS20250 (LIS76_20300) shc 4133336..4135213 (+) 1878 WP_252291700.1 squalene--hopene cyclase -
  LIS76_RS20255 (LIS76_20305) - 4135346..4135948 (-) 603 WP_252291702.1 class I SAM-dependent methyltransferase -
  LIS76_RS20260 (LIS76_20310) - 4135962..4136657 (-) 696 WP_252291704.1 ABC transporter ATP-binding protein -
  LIS76_RS20265 (LIS76_20315) - 4136654..4137466 (-) 813 WP_252291706.1 ABC transporter permease subunit -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34699.89 Da        Isoelectric Point: 9.7153

>NTDB_id=619591 LIS76_RS20240 WP_252291696.1 4131528..4132481(-) (ceuB) [Peribacillus asahii strain CMF4]
MRIWMLIVAAVVLSFISLFIGAIDIKPSDLLDWNSDKTQIFLASRVPRLMAIILAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDAAKLGILISMLFFTNVTYTQQVIFSFAFALVGTLVFMQILDRIKFKDVIFVPLIGIMYGNILSSITTFFAYEADLL
QNISSWLMGSFTLIIAGRYELLYISIPAVILAYLYANKFTVAGMGEDFAKNLGLSYKFVLNIGLILVAIIATTVVLTVGV
IPFLGLIVPNIVSLYLGDNLRKTIPHTAVLGIVFLLLCDIIGRIIVHPYEIPVNVTVAVIGSVIFLIMLVRGRAYAK

Nucleotide


Download         Length: 954 bp        

>NTDB_id=619591 LIS76_RS20240 WP_252291696.1 4131528..4132481(-) (ceuB) [Peribacillus asahii strain CMF4]
ATGAGAATATGGATGTTAATAGTTGCAGCTGTAGTCCTGTCATTTATATCGTTATTTATTGGGGCAATTGATATTAAGCC
GAGTGACTTGCTCGACTGGAATTCGGATAAGACACAAATTTTCTTAGCAAGTCGAGTACCTCGTTTAATGGCGATTATAT
TGGCAGGAGCAGGAATGAGTATTGCTGGTTTAATTATGCAGTCTTTAAGTCGAAATAAATTTGTCTCTCCAACGACTGCT
GGTACGTTAGATGCAGCAAAACTAGGAATTTTAATTTCAATGCTGTTCTTTACAAATGTAACCTATACGCAGCAAGTTAT
TTTTAGCTTTGCCTTTGCTTTAGTAGGAACATTAGTTTTTATGCAAATTTTGGATCGTATTAAATTTAAGGATGTCATTT
TTGTTCCATTAATCGGGATTATGTACGGGAATATTTTGTCATCGATTACGACATTTTTTGCCTATGAAGCAGACCTTCTC
CAAAATATTTCATCTTGGTTAATGGGGAGCTTCACATTAATTATTGCGGGACGCTATGAACTGTTATACATAAGTATTCC
AGCGGTTATTTTAGCGTATCTTTATGCGAATAAGTTTACAGTTGCAGGTATGGGAGAAGATTTTGCTAAAAACTTAGGAT
TAAGTTATAAGTTTGTGTTAAATATAGGCCTTATCCTTGTTGCAATTATTGCTACAACTGTCGTACTAACTGTCGGCGTT
ATTCCGTTTTTAGGCTTAATCGTACCTAACATTGTATCTCTTTATTTAGGTGATAATTTACGTAAAACTATTCCACATAC
AGCGGTACTAGGAATTGTCTTCCTATTATTATGTGATATTATTGGACGTATTATTGTTCACCCTTATGAGATTCCGGTTA
ACGTAACTGTGGCAGTAATCGGTAGTGTGATCTTCTTAATTATGTTAGTTAGGGGGAGAGCATATGCGAAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(11-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.814

94.953

0.53