Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LIS76_RS16215 Genome accession   NZ_CP085717
Coordinates   3320873..3322588 (-) Length   571 a.a.
NCBI ID   WP_252290651.1    Uniprot ID   -
Organism   Peribacillus asahii strain CMF4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3315873..3327588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS76_RS16200 (LIS76_16255) - 3316545..3318122 (-) 1578 WP_252290647.1 FapA family protein -
  LIS76_RS16205 (LIS76_16260) spo0A 3318288..3319076 (-) 789 WP_127761281.1 sporulation transcription factor Spo0A -
  LIS76_RS16210 (LIS76_16265) spoIVB 3319447..3320742 (-) 1296 WP_252290649.1 SpoIVB peptidase -
  LIS76_RS16215 (LIS76_16270) recN 3320873..3322588 (-) 1716 WP_252290651.1 DNA repair protein RecN Machinery gene
  LIS76_RS16220 (LIS76_16275) argR 3322609..3323058 (-) 450 WP_119115461.1 transcriptional regulator ArgR -
  LIS76_RS16225 (LIS76_16280) - 3323344..3324171 (-) 828 WP_252290653.1 TlyA family RNA methyltransferase -
  LIS76_RS16230 (LIS76_16285) dxs 3324176..3326068 (-) 1893 WP_252290655.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LIS76_RS16235 (LIS76_16290) - 3326502..3327392 (-) 891 WP_127762614.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 64560.52 Da        Isoelectric Point: 5.2055

>NTDB_id=619580 LIS76_RS16215 WP_252290651.1 3320873..3322588(-) (recN) [Peribacillus asahii strain CMF4]
MLSELSIKNFAIIDSLAISLEKGLTVLTGETGAGKSIIIDAVHLLVGGRGSAEFIRHGETKAEIEGLFQIDEPQHPVFVK
ASEFGIDISDGMVVIRREMSASGKSVCRVNGKLVTIATLREIGRTLIDIHGQHEHQELMDERLHLPLLDQFGGEEVMLAL
SEYEKLYKRYNTAQKQLKSLSQDEQQMVHRLDLIQFQFDEIQKAELKLHEDEQLLEERKKINNYEKIHEALQTSYNALNG
EQHGLDWLSIAMHHLEEAANLDESLKNSSDIVSNSYFLLEDAISTIRDQLDSLDFDTERIDFIEGRLNEINQLKRKYGRT
IEEIVEYGAKIEEEIETLLNRETHIAKLEKELNSIKADLLIEAKHLSSLRQTYAEQLTKKIKQELKELYMEKTVFEARFH
QTAHTFDETIDREINRTGLDVMEFYISTNPGEPLKPLSKIASGGEMSRIMLALKSIFSQHQGITSIIFDEVDTGVSGRVA
QSIGEKIYKVATGSQVLCISHLPQVAAMADTHLFIAKKVTEGRTHTSVTPLAEEEKIKEIGRMIAGVEITDLTKQHANEL
IQQAHKIKVTS

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=619580 LIS76_RS16215 WP_252290651.1 3320873..3322588(-) (recN) [Peribacillus asahii strain CMF4]
TTGTTATCAGAATTATCGATTAAAAATTTTGCCATTATAGATAGTTTAGCGATTTCTTTAGAAAAAGGTTTAACGGTGCT
AACTGGAGAAACGGGAGCGGGAAAGTCCATTATTATTGATGCTGTTCACTTATTAGTAGGGGGACGCGGGTCAGCGGAGT
TTATTCGACATGGGGAAACGAAGGCTGAAATCGAGGGGCTATTTCAAATTGATGAGCCGCAGCACCCTGTTTTTGTTAAA
GCATCGGAATTTGGGATTGATATAAGTGATGGCATGGTTGTTATAAGACGAGAAATGTCTGCGAGTGGCAAAAGCGTATG
TCGAGTAAACGGAAAGCTTGTGACCATCGCTACGTTACGTGAAATTGGTCGAACGCTTATCGATATTCATGGACAGCACG
AACATCAAGAGCTGATGGATGAACGTCTTCATTTACCTTTACTTGATCAATTTGGCGGGGAAGAGGTTATGTTAGCGCTT
TCGGAATATGAAAAGCTATATAAGCGCTATAACACTGCTCAGAAGCAGTTAAAAAGTCTCAGCCAGGACGAGCAGCAAAT
GGTGCATCGACTCGATTTAATTCAGTTTCAATTTGATGAAATTCAAAAGGCTGAGTTGAAGCTGCACGAAGATGAGCAGC
TTCTTGAGGAACGAAAAAAAATTAATAACTATGAAAAAATTCATGAAGCTCTGCAAACGAGCTACAATGCTTTGAATGGT
GAACAGCATGGGTTAGATTGGCTGTCGATTGCGATGCATCATTTAGAAGAAGCAGCTAACCTTGATGAATCTTTAAAGAA
TAGTTCAGATATTGTTTCAAATAGTTACTTTTTATTAGAAGATGCCATTTCAACGATTCGTGATCAGCTGGATTCTCTTG
ATTTTGATACGGAACGGATTGATTTTATTGAAGGGCGCCTAAATGAAATTAACCAATTGAAACGTAAATACGGACGTACG
ATTGAGGAAATTGTCGAATATGGAGCAAAGATTGAAGAAGAAATTGAAACGTTACTTAATCGGGAAACGCATATTGCTAA
GCTGGAAAAGGAATTAAACTCGATTAAAGCAGATTTACTCATTGAGGCCAAACATTTATCGAGTCTTCGTCAAACCTATG
CAGAGCAATTAACGAAAAAAATTAAGCAAGAACTGAAAGAGTTATATATGGAAAAAACTGTTTTTGAAGCTCGTTTTCAT
CAAACGGCTCATACATTTGATGAAACAATCGACAGAGAAATTAATCGAACAGGACTTGATGTCATGGAGTTTTATATTTC
AACGAATCCTGGTGAACCGCTAAAACCGTTATCGAAAATTGCCTCTGGCGGTGAAATGTCTCGTATTATGTTGGCTTTAA
AAAGTATTTTTTCGCAGCATCAAGGGATTACATCGATTATTTTTGATGAAGTCGATACAGGAGTAAGCGGGCGAGTTGCT
CAATCGATTGGAGAAAAAATTTACAAAGTAGCTACAGGTTCTCAAGTGCTTTGTATTTCTCATTTACCTCAAGTCGCTGC
AATGGCTGATACGCATTTGTTTATTGCTAAAAAAGTGACAGAAGGAAGAACACATACATCTGTTACACCATTAGCTGAGG
AAGAAAAAATAAAAGAAATTGGCCGGATGATAGCTGGTGTTGAAATTACTGATTTAACGAAGCAACATGCTAATGAATTA
ATTCAACAAGCTCATAAAATTAAAGTCACATCCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.458

100

0.62