Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LIS76_RS05460 Genome accession   NZ_CP085717
Coordinates   1080879..1082696 (+) Length   605 a.a.
NCBI ID   WP_252293547.1    Uniprot ID   -
Organism   Peribacillus asahii strain CMF4     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1075879..1087696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS76_RS05440 (LIS76_05445) preA 1076192..1077478 (+) 1287 WP_252293540.1 NAD-dependent dihydropyrimidine dehydrogenase subunit PreA -
  LIS76_RS05445 (LIS76_05450) - 1077569..1079041 (+) 1473 WP_252293541.1 NCS1 family transporter -
  LIS76_RS05450 (LIS76_05455) - 1079064..1079300 (+) 237 WP_252293543.1 hypothetical protein -
  LIS76_RS05455 (LIS76_05460) - 1079540..1080751 (+) 1212 WP_252293545.1 competence protein CoiA family protein -
  LIS76_RS05460 (LIS76_05465) pepF 1080879..1082696 (+) 1818 WP_252293547.1 oligoendopeptidase F Regulator
  LIS76_RS05465 (LIS76_05470) - 1082752..1082919 (-) 168 WP_252293549.1 hypothetical protein -
  LIS76_RS05470 (LIS76_05475) - 1083498..1084370 (-) 873 WP_252283479.1 ClpXP adapter SpxH family protein -
  LIS76_RS05475 (LIS76_05480) - 1084394..1084798 (-) 405 WP_252293551.1 globin -
  LIS76_RS05480 (LIS76_05485) - 1085076..1085699 (-) 624 WP_252293552.1 lytic transglycosylase domain-containing protein -
  LIS76_RS05485 (LIS76_05490) - 1085727..1086305 (-) 579 WP_252293554.1 CYTH domain-containing protein -
  LIS76_RS05490 (LIS76_05495) - 1086629..1087258 (+) 630 WP_127759400.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69817.07 Da        Isoelectric Point: 4.6617

>NTDB_id=619572 LIS76_RS05460 WP_252293547.1 1080879..1082696(+) (pepF) [Peribacillus asahii strain CMF4]
MTKETSVNTLPSRQDITVEDTWRLEDIFASDEAWEAAYQEVKEELKKANQFQGKLGESADQLYNALQFQDNVLEKLGKVY
AYSHMRYDQDTTNSLYQGFDDRAKNLYAQASSAFAYIVPELLSIEESTISQFMAEKSELKLYEHAIEEINLQRPHVLSAT
EEALLAQASEVFDASSNTFGMLNNADLKFPTIKDEDGNDAEITHGRYIRFLESTDRRVRQEAFEGVYSTYGKFRNTFAST
LAGQVKSQNFNASVRKYDNARQAALSNNNIPEAVYDNLVETVNEHLPLLHRYLDLRKKVLKLDELHMYDLFTPLVQEVKM
EVTYEEAKDYVLKGLAPLGEDYLQVLKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQNNVNNLFTLIHEFGHS
VHSYYTRKYQPYPYGNYSIFVAEVASTCNENLLNDYLLNTIEDEKKRIYLLNHYLEGFRGTLFRQTMFAEFEHTIHVKAQ
NGEALTADMLTEEYYALNKKYFGDNMVIDEEIGLEWARIPHFYYNYYVYQYATGISAATALSKQILEEGEPAVNRYIEFL
KSGSSDYPIEVLKKAGVDMTQAEPVREALKVFEEKLNELESLLLK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=619572 LIS76_RS05460 WP_252293547.1 1080879..1082696(+) (pepF) [Peribacillus asahii strain CMF4]
ATGACAAAGGAAACATCGGTGAATACATTACCATCACGCCAAGATATTACGGTTGAGGATACATGGAGACTTGAGGATAT
TTTTGCATCAGATGAGGCTTGGGAAGCGGCTTACCAGGAAGTAAAAGAAGAGCTGAAGAAAGCGAATCAATTCCAAGGCA
AGTTAGGAGAGAGTGCAGATCAATTATATAATGCGCTGCAATTTCAAGATAATGTGTTAGAGAAGTTAGGGAAAGTCTAT
GCGTACTCTCATATGCGTTATGATCAAGATACAACGAACTCTCTTTATCAAGGGTTCGATGACCGGGCGAAAAATTTATA
TGCACAAGCATCCAGTGCATTTGCTTATATTGTTCCTGAACTGTTAAGCATTGAGGAAAGCACAATTTCTCAGTTTATGG
CTGAAAAGAGTGAATTGAAATTATATGAACATGCGATTGAAGAAATTAATTTACAGCGTCCGCATGTGTTATCTGCGACA
GAGGAGGCATTGTTAGCTCAAGCTTCAGAAGTGTTTGATGCCTCTAGTAATACGTTTGGAATGTTAAATAATGCGGATTT
GAAATTCCCAACGATTAAAGATGAAGACGGCAATGATGCAGAGATTACGCATGGTCGCTATATTCGTTTTTTAGAAAGTA
CGGATCGTCGTGTTCGTCAGGAAGCTTTTGAAGGAGTATATAGTACGTATGGCAAGTTCCGTAATACATTTGCGAGCACG
CTAGCCGGACAAGTGAAGAGCCAAAACTTTAACGCATCTGTTCGTAAATATGACAATGCCCGTCAAGCTGCTCTAAGCAA
TAATAATATTCCAGAAGCGGTTTATGATAATTTAGTGGAAACAGTGAATGAGCACCTTCCTTTACTACACCGCTATTTAG
ATTTACGCAAGAAAGTTCTAAAGCTTGATGAACTTCATATGTACGATTTATTTACGCCGCTTGTACAAGAAGTGAAGATG
GAAGTAACGTATGAAGAAGCGAAAGACTATGTTTTAAAAGGTCTTGCGCCGCTTGGTGAAGATTATTTACAAGTTCTAAA
AGAAGGATTTGAAAATCGTTGGGTCGATGTGCATGAGAATAAAGGAAAACGCAGCGGTGCGTATTCTTCAGGTACATATG
GTACAAATCCATATATTTTAATGAACTGGCAAAATAACGTGAACAACTTATTTACGCTTATTCATGAATTCGGTCATTCT
GTTCATAGTTACTACACGCGTAAATATCAGCCATATCCGTATGGAAACTACTCGATTTTTGTAGCGGAAGTAGCCTCGAC
ATGTAATGAGAACTTATTAAATGATTATTTATTAAATACAATTGAGGACGAGAAGAAGCGAATTTATTTATTAAATCATT
ATTTAGAAGGCTTCCGAGGCACGTTATTCCGTCAAACGATGTTTGCAGAGTTTGAGCATACAATTCACGTAAAAGCTCAA
AATGGTGAGGCATTAACAGCGGATATGCTTACGGAAGAGTACTATGCGTTAAATAAGAAGTATTTTGGCGATAACATGGT
GATTGATGAAGAAATCGGCTTAGAATGGGCGAGAATTCCGCATTTCTATTACAATTATTATGTGTATCAATATGCGACAG
GTATTAGCGCGGCTACAGCATTAAGTAAACAAATTCTTGAAGAAGGAGAGCCAGCGGTTAACAGATATATTGAATTCTTA
AAATCAGGCAGCTCCGATTATCCGATTGAAGTATTGAAAAAAGCTGGAGTCGATATGACGCAAGCCGAGCCAGTTCGTGA
AGCATTAAAAGTGTTTGAAGAGAAATTAAATGAATTAGAATCACTTCTATTAAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.769

96.694

0.491